BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949808
Length=301
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16120.2 | Symbols: | alpha/beta-Hydrolases superfamily pro... 313 7e-85
> AT5G16120.2 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr5:5265633-5267916 FORWARD LENGTH=1438
Length=1438
Score = 313 bits (169), Expect = 7e-85
Identities = 199/213 (93%), Gaps = 4/213 (2%)
Strand=Plus/Plus
Query 28 AGACACCAGAGACTGGGATTAAGACAAAGGAGTCTTATGAGGTGAATTCGAGAGGAGTTG 87
|||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 381 AGACACCAGAAAATGGGATTAAGACAAAGGAGTCTTTTGAGGTGAATTCGAGAGGAGTTG 440
Query 88 AGATCTTCTCCAAAAGCTGGCTTCCTGAAGCTTCTAGGCCTAGAGCTTTGGTTTGTTTCT 147
|||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 441 AGATTTTCTCTAAAAGCTGGCTTCCTGAAGCTTCTAAGCCTAGAGCTTTGGTTTGTTTCT 500
Query 148 GCCATGGTTATGGAGATACTTGCACGTTTTTCTTCGAAGGCAGGAATTGCAAGAAGATTG 207
||||||||||||||||||||||||| |||||||||||||| | | ||||||| ||||||
Sbjct 501 GCCATGGTTATGGAGATACTTGCACATTTTTCTTCGAAGG-A--A-TTGCAAGGAGATTG 556
Query 208 GCATTGTCGGGATATGGAGTTTTTGCTATGGAT 240
|||||||| |||||||||||||| |||||||||
Sbjct 557 GCATTGTCTGGATATGGAGTTTTCGCTATGGAT 589
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13924166473
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5