BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949816
Length=2580
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52530.1 | Symbols: | dentin sialophosphoprotein-related | ... 3199 0.0
> AT5G52530.1 | Symbols: | dentin sialophosphoprotein-related
| chr5:21317140-21321236 FORWARD LENGTH=3254
Length=3254
Score = 3199 bits (1732), Expect = 0.0
Identities = 2070/2230 (93%), Gaps = 36/2230 (2%)
Strand=Plus/Plus
Query 41 CAGAGCTTCCTTGGAAAAAGGTGGCTAAAGGTAGCAGAAGTTCAACAAGGCGTAGCAAGA 100
||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 445 CAGAGCTTCCTTGGAAACCGGTGGCTAAAGGTAGCAGAAGTTCAACAAGGCGTGGCAAGA 504
Query 101 AACCAGTTGTACGTGTT-CAAGCCTCAGGTATTGAGGCAGAAGCCAAGAGTTC-A-ACAG 157
||| |||| ||| ||| | ||| |||| ||||||| |||||| ||||||||| | |||
Sbjct 505 AACTAGTTAAACGAGTTGC-AGCTTCAGATATTGAGTCAGAAGACAAGAGTTCAACACAC 563
Query 158 GCACT-GTGGCAGGAAAATCAAAGCCTGAAAAGCTTGGCGTTTCTGTTCTAGGTCAGCAT 216
|||| || |||||| ||||||||| | |||||||||||||||||||||||||||||||
Sbjct 564 ACACTAGTAGCAGGAGAATCAAAGCGTCCAAAGCTTGGCGTTTCTGTTCTAGGTCAGCAT 623
Query 217 TTCGCTGAAAGAGTAGAGCATGTTCCGATAAAGAAACGGAGATTTATTGTT--CGCT-C- 272
|||| |||||||||||||||||||||||| |||||||||| |||| | ||| | || |
Sbjct 624 TTCGTTGAAAGAGTAGAGCATGTTCCGATTAAGAAACGGATATTTGTGGTTAGCTCTCCA 683
Query 273 T--CCGT---CA-C--CATCAAAGAGGCCTTCTACTCAACGTGAAGGCTCAGAACATAAG 324
| || | || | ||||||||||| | ||| ||||||||||||||||||||||||||
Sbjct 684 TCACCATCACCATCATCATCAAAGAGGTCATCTGCTCAACGTGAAGGCTCAGAACATAAG 743
Query 325 GCGCAGATCAACCATGCTTTGCCTGTTTCGAGATTAAACCCTAATTTAATTTCAGACGTC 384
|| ||||||||||||| ||| |||||||||||||||||||||||||| | |||||||||
Sbjct 744 GCACAGATCAACCATGTTTTACCTGTTTCGAGATTAAACCCTAATTTGGTCTCAGACGTC 803
Query 385 CGTGATGAAAAGCCTGATTGTAGTGATCATGACTTTTCTGGTATCAAGATACTTGCTGAT 444
||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 804 CGTGATGAAAAGCCTGATTACAGTGTTCATGACTTTTCTGGTATCAAGATACTTGCTGAT 863
Query 445 GCTGCTTGCAGTGCTGACGTGAGTAATGATTTTGCACCAGCTGTAGACTGTCTGCCTGCT 504
|||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 864 GCTGCTTGCAGTACTGATGTGAGTAATGATTTTGCACCAGCTGTAGACCGTCTGCCTGCT 923
Query 505 GAAGAATCTGTTGTTCAGCAACAAGATACATTGACCATATCAACTCATGTTGAAGGTAAC 564
||||||| || |||||||| ||||||||| | |||||||||||||||||||||||||||
Sbjct 924 GAAGAATTTGCTGTTCAGCTACAAGATACCTCAACCATATCAACTCATGTTGAAGGTAAC 983
Query 565 GATTCATCAGCTGGAACTGCTGATGTCTCGCATACCGCGGTTGATTCCGGTGATCAGACT 624
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 984 GATTCATCAGCTGGAACTGCTGATGTCTCGCATACTGCGGTTGATTCCGGTGATCAGAGT 1043
Query 625 GGGCAAGGCAAGAGCAATATTATAGCGCCTCAGAAATATCCTCTAACAAATTTGTGCAAA 684
|| ||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1044 GGCCAAGGAAAGAGCAATATTGTAGCGCCTCAGAAACATCCTCTAACAAATTTGTGCAAT 1103
Query 685 GAGTTGGCTGATGAGCAGAGTGTAGAGCACAGCAGAGTGACCTCTGGAGGGATGATAGCA 744
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1104 GAGTTGGCTGATGAGCAGAGTGTAGAGCACAGCAGAGTAACCTCTGGAGGGATTATAGCA 1163
Query 745 CCTaaaaaaa-CTAGCATTGCTCTTTCAAATGAATCCTCAACAGAAAGACCGAAGGCTAA 803
|||||||||| || ||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1164 CCTAAAAAAACCT-GCATTGCTCTTTCAAATGAATCCTCAACAGAAAGACCAAAGGATAA 1222
Query 804 TGTAGAAGCAGGTGAAAGTGAAACTTTAGCACCTGATAGTGGAGCTGTAACGGTGTCAGA 863
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1223 TGTAGAAGCAAGTGAAAGTGAACCTTTAGCACCTGATAGTGGAGCTGTAACGGTGTCAGA 1282
Query 864 GAAATCATCAGCCGTTGAGCCAACTGAAAAGAACAGTGAAGGCCTTAAAGATGTTAAATT 923
||||| |||||||| ||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1283 GAAATTATCAGCCGATGAGCCAACTGAAAAAAACAATGAAGGCCTTAAAGATGTTAAATT 1342
Query 924 CCACTGGGATTTAAATTTTCCTTGTGATGTAGAAGATGAAGCCTCTGGAAGAGATGTAGA 983
| ||||||||||||| ||||||||||||||||||||||||| ||| ||||||||| |||
Sbjct 1343 TCTCTGGGATTTAAATATTCCTTGTGATGTAGAAGATGAAGCGTCTCGAAGAGATGAAGA 1402
Query 984 GGGAGAAATCACAGAGTCTATTGCCCCTAAAGAGAGCGAACGTTTTGATGGAAGTAAGGA 1043
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
Sbjct 1403 GGGAGAAATCACAGAGTCTATTGCCCCTAAAGGGAGCGAACCTTTTGATGGAAGTAAACA 1462
Query 1044 CAGTATGGATGGGGTAATTGCATCAGATGAACATACAAAATTTTCATCACCATCTGGGCC 1103
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1463 CAGTATGGATGGGGTAATTGCATCAGATGAACATACAAAATTTTCATCACCATCTAAGCC 1522
Query 1104 TAAT-ACTGAAGCAGCTGCTACAAATGACAAGGAGTGCCAATCTGGTTATGACTCCCAGT 1162
|||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1523 TAATGA-TGAAGCAGCTGCTACAAATGACAAGGATTGCCAATCTGGTTATGACTCCCAGT 1581
Query 1163 TTGAGGATGGAGAGTTGAGGGAACCATACCCTTGGGAAGAAATTGGAGAGGTTGAACAGT 1222
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1582 TTGAGGATGGAGAGTTGAGGGAACCATACCCTTGGGAAGAAAATGAAGAGGTTGAACAGT 1641
Query 1223 TGGATTACGGGTCTGAGCCAGAGAATGAGAGATTCTACTCTATGGATTCTGAGAAGGGAA 1282
|||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1642 TGGATTACGGTTCTGAGCCAGAGGATGAGAGATTCTACTCTATGGGTTCTGAGAAGGGAA 1701
Query 1283 TCTTGGCAGACAAGAATTTCAGACACGTTAAGTGTGAATCTGGTGATGCACTGAGAATTG 1342
||||| |||| |||||||||| || |||||||||||||||||||||||||||||| |||
Sbjct 1702 TCTTGACAGATGAGAATTTCAGTCATGTTAAGTGTGAATCTGGTGATGCACTGAGAGTTG 1761
Query 1343 GGCAGGCTAATGAAGGGAGTGACATAGAGAAGCAAGTTGTTGTAAACATGAGCGATTCAC 1402
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1762 GGCAGGCTAATGAAGGAAGTGACATAGAGAAGCAAGCTGTTGTAAACATGAGCGATTCAC 1821
Query 1403 ATCCTAAGAAGGGCTCTTCTTCTCCTTCAAGGAGTTTTGGTTCAAAACCATACAAGGTGG 1462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1822 ATCCTAAGAAGGGCTCTTCTTCTCCTTCAAGGAGTTTTGGTTCAAAACCATACAAGGAGG 1881
Query 1463 TGCCTTCACATGATGCCATCCAGAGGAGAAGGCCTGATACTTATGAAGAGGTGAGCACGG 1522
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1882 TGCCTTCACATGATGCAATCCAGAGGAGAAGGCCTGATACTTATGAAGAGGTGAGCACGG 1941
Query 1523 GTCCAGATAGGTTTGCTGGGAGAGACGACAGGTCAGGGATGCGTATGCGTAATAAGAGTC 1582
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1942 GTCCAGATAGGTTTGCTCGGAGAGACGACAGGTCAGGGATGCGTATGCGTAATCGGAGTC 2001
Query 1583 CTCGGAGAGGGTATTTTAATGGTTGGGATTCCAAACGACGCTTCTCCCCACCTAATTACA 1642
||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 2002 CTCAAAGAGGGTATTTTAGTGGTTGGGATTCCAAACGACGCTTCTCCCCTCCTAATTACA 2061
Query 1643 AAGATGGTTCCTATGGTTCCGGGCGTCCATGGCCTAAAAGAATGGCAGATGATCGAGGTA 1702
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2062 AAGATGGTTCTTATGGTTCCGGGCGTCCATGGCATAAAAGAATGGCAGATGATCGAGGTA 2121
Query 1703 TGATGAACAACGGCTTTGATGAATCAGGGTCAGGAC-----C-AGGACCAGAACCAGAT- 1755
|||||||| ||||||||||| ||||||||||||| | |||||||||||||||
Sbjct 2122 TGATGAAC---GGCTTTGATGAGTCAGGGTCAGGACAAGGACCAGGACCAGAACCAGAAC 2178
Query 1756 --G-G--TTATGTACGTAGGCAATTCTCAAATGGTGGATACAGAGGTCGGTTTAAGAGAT 1810
| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2179 CAGAGGGTTATGTTCGTAGGCAATTCTCAAATGGTGGATACAGAGGTCGGTTTAAGAGAT 2238
Query 1811 TCCCAGATGGTGGGGATCGTAAATTCAGGGGCCCACACAGTGATACCAACCAATTTCCTG 1870
||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||| |||
Sbjct 2239 TCCCAGATGGTGGGGATCGTAAATTCAGGGGCCCATACACTGATACAAACCAATTTTCTG 2298
Query 1871 GTCGGATGCAGAACCGGATGAGTGGTAATAGGAGAGAGAGAGGTGGCTCTCCGGTCCTGA 1930
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 2299 GTCGGATGCACAACCGGATGAGTGGTAATAGGAGAGAGAGAGGTGGCTCTCCGGTTGTCA 2358
Query 1931 GGAGATTGCACTACCCGCAATCAGAGTCAAGATCCAGAAGCCGTTCTCCAGTCTCGTGGA 1990
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2359 GGAGATTGCACCACCCGCAATCAGAGTCAAGATCCAGAAGCCGTTCTCCAGTCTTGTGGA 2418
Query 1991 ATAGCCGTAACAGATCATCTCCTCCTCCTCCAGGTGGGTTAAGAGCAGACGAGAGGACGA 2050
|| |||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||
Sbjct 2419 ATGGCCGTAACAGATCACCTCCTCCTCCTCCAGGTGGGTTTAGAGCAGACGAGAGGATGA 2478
Query 2051 CGGAAAGAGTGAGGTTGCCTTTCCAGAAACGGTTTCCTGCAGATCAGGAGATGGGTTACA 2110
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2479 CGGAAAGAGTGAGGCTGCCTTTCCAGAAACGGTTTCCTGCAGATCAGGAGATGGGTTATA 2538
Query 2111 TGTCACCTCCGAGAAACAGAATGTCGTCGCCGAGGTTCTTTGAAGGGAGGAATAATGATA 2170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2539 TGTCACCTCCGAGAAACAGAATGTCGTCGCCGAGGTTCTTTGAAGGGAGGAATAATGGTG 2598
Query 2171 CTGGAGAGAATCATAATAGCTTCAGGGAAAGGAAGTTCCGGCCTGGACAGAGATTTGATG 2230
||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 2599 CTGGAGAGAATTATAATAGCTTCAGAGAAAGGAAGTTCCGGCCTGGACAGAGATTTTATG 2658
Query 2231 TCGGAAATTC 2240
||||||||||
Sbjct 2659 TCGGAAATTC 2668
Score = 466 bits (252), Expect = 5e-130
Identities = 310/337 (92%), Gaps = 8/337 (2%)
Strand=Plus/Plus
Query 2248 AATGATGATGCTGGAGAGAATCATAATAGCTTCAGGGAAAGGAAGTTCCGGCCTGGACAG 2307
||| ||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 2589 AATAATGGTGCTGGAGAGAATTATAATAGCTTCAGAGAAAGGAAGTTCCGGCCTGGACAG 2648
Query 2308 AGATTTGATGTCGGACATTCTATGAGAAGACCGAATTCTGACAACAACAACTTGAGACCA 2367
|||||| |||||||| |||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 2649 AGATTTTATGTCGGAAATTCCATGAGAAGACCGAATTCTGACAACAACAACTTAAGACCA 2708
Query 2368 TTTATTCGGAACAGAAGATTTGA-AGGCACGGAAGAGAACACTGGTCGGAACAGGTTTGA 2426
||||||| ||||||||||||||| | | ||||||||| ||||||| |||||||||||||
Sbjct 2709 TTTATTCCGAACAGAAGATTTGACAATC-CGGAAGAGAGCACTGGTGGGAACAGGTTTGA 2767
Query 2427 GATGGCTCAGCAGCGGAGGACTCGGCGGTCTGAGGCCACAGAAGAGGGAGGTGATGATAT 2486
|||| |||||||||| |||||||| ||||||||| |||||||||| |||||||||| |||
Sbjct 2768 GATGACTCAGCAGCGAAGGACTCGACGGTCTGAGACCACAGAAGATGGAGGTGATGTTAT 2827
Query 2487 TCGACGGTTCAAGTTTAATGAAGAACAAC---CAGTGGTGGTAGCCAACAACGACAACAA 2543
||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||
Sbjct 2828 TCGACGGTTCAAGTTTAATGAAGAACAACAGTCAGTGGTGGTAG-C--CAACGACAACAA 2884
Query 2544 CAACAAAGAGTCATGATAACAGATAACGTAAGAGACT 2580
|||||||||||||||||||||||||||||||||||||
Sbjct 2885 CAACAAAGAGTCATGATAACAGATAACGTAAGAGACT 2921
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 128076205479
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5