BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949817
Length=1440
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52540.1 | Symbols: | Protein of unknown function (DUF819) ... 2213 0.0
> AT5G52540.1 | Symbols: | Protein of unknown function (DUF819)
| chr5:21321428-21323780 REVERSE LENGTH=1708
Length=1708
Score = 2213 bits (1198), Expect = 0.0
Identities = 1365/1444 (95%), Gaps = 17/1444 (1%)
Strand=Plus/Plus
Query 1 TCGTGAAGCAGACGCGACAAATGGCGATGAGCTTGCCGTTACTCAATGTGACCGGAATCT 60
||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||| ||
Sbjct 59 TCGTGAAGCAGACGCGACAAATGGCGACGAGCTTGCCATTACTCAATGTGATCGGAAACT 118
Query 61 CGTTA-C--CGTCGTCGAGACTATTTCGCCGGCGTCCACACATTGTTTCACGCAAAGATC 117
||||| | ||||||||||||||||||| |||||| | |||||||||||||| ||||||
Sbjct 119 CGTTACCGTCGTCGTCGAGACTATTTCGTCGGCGTTCGTACATTGTTTCACGCCAAGATC 178
Query 118 TTCCTGAATTCTCGGCTAAAGCAGTCTCTTCACGGCTTAGCTTCTCTCCTGCTTCGTTGT 177
| ||||||||||| |||||| || ||||||| |||||||||||||||||||||||||||
Sbjct 179 TACCTGAATTCTCAGCTAAATCAACCTCTTCAAGGCTTAGCTTCTCTCCTGCTTCGTTGT 238
Query 178 CGCAATTTCGTAACGGAAGCGACAGGTTTCTCTCGCCGGATTCGTTACCGGAATCATCTT 237
|||||||||||||||||| ||||||| || ||| | ||| ||||||||||| |
Sbjct 239 CGCAATTTCGTAACGGAACCGACAGG-TT-TCT-----G--TCG---CCGGAATCATCAT 286
Query 238 CTCCGATCCGATCGGTGACTGTGAGTTCGTTGAGTACACCTCTCATTTCACCCAACGATG 297
|||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 287 CTCCGATCCGATCGGTTACTGTGAGTTCGTTGAGTACGCCTCTCATTTCTCCCAACGATG 346
Query 298 AATGGGGAACTTGGACTGCTCTCTTCGCCACTGGGGCTCTCGGTCTCTGGTCGGAGAATA 357
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct 347 AATGGGGAACTTGGACTGCTCTCTTCGCTACTGGTGCTCTCGGTCTCTGGTCGGAGAAGA 406
Query 358 CAAAGGTCGGAGCCGCGATGAGTGGTGCGTTAGTCAGCACTCTAGTTGGGCTTGCAGCTA 417
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 407 CAAAGGTCGGAGCCGCTATGAGTGGTGCGTTAGTCAGCACTCTAGTTGGTCTTGCAGCTA 466
Query 418 GTAATCTAGGGATTATTTCTTCCCAAGCTCCTGCTTTTGCTGTAGTGTTGAATTTCCTGC 477
||||||||||||| |||||||| |||||||||||||||||||| ||||||||||| ||||
Sbjct 467 GTAATCTAGGGATCATTTCTTCTCAAGCTCCTGCTTTTGCTGTTGTGTTGAATTTTCTGC 526
Query 478 TCCCTTTAGCTGTTCCTCTGTTGTTGTTTAGAGCTGATTTGCGCCGTGTGGTTCAGTCCA 537
| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 527 TTCCATTAGCTGTTCCTCTGTTGTTGTTTAGAGCTGATTTGCGTCGTGTGGTTCAGTCCA 586
Query 538 CTGGAAAGCTTCTCTTGGCTTTTTTGATTGGATCAGTTGCCACAACGGTCGGTACAGCTC 597
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 587 CTGGAAAGCTTCTCTTGGCCTTTTTGATTGGATCAGTTGCCACAACGGTGGGTACAGCTC 646
Query 598 TGGCATACTATCTAGTGCCAATGAAATCACTTGGGCCTGATAGTTGGAAGATTGCAGCTG 657
||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 647 TGGCATACTATTTAGTGCCAATGAAGTCACTTGGCCCTGATAGTTGGAAGATTGCAGCTG 706
Query 658 CTCTCATGGGAAGACATATCGGTGGAGCCGTCAACTACGTAGCTATATCAAATGCTCTTG 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 CTCTCATGGGAAGACATATCGGTGGAGCCGTCAACTACGTAGCTATATCAAATGCTCTTG 766
Query 718 GAGTTACACCATCGGTTTTAGCTGCTGGACTGGCTGCTGATAATGTTATATGCGCTGTAT 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 GAGTTACACCATCGGTTTTAGCTGCTGGACTGGCTGCTGATAATGTTATATGCGCTGTAT 826
Query 778 ATTTCACTACATTGTTTGCTTTGGGCTCCAAAATACCTGCAGAAGCTGTACCGCCACCGA 837
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 ATTTCACGACATTGTTTGCTTTGGGCTCCAAAATACCTGCAGAAGCTGTACCGCCACCGA 886
Query 838 CTACTGAT-GCAAATGCAGAGACGAACCAAGTTTCTGAAACTAAAAACAAAATTCCTGTG 896
||||| || | | |||||||||||||| ||| ||||||||||||||| ||||||||||||
Sbjct 887 CTACT-ATTGTAGATGCAGAGACGAACGAAGCTTCTGAAACTAAAAATAAAATTCCTGTG 945
Query 897 CTACTGATAGCTACTGGAATTGCTGTGTCATTAGCTATATGCAAGGCTGGGGCTTTGCTA 956
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 946 CTACTGATAGCTACTGGAATTGCTGTGTCATTAGCTATCTGCAAGGCTGGGGCTTTGCTA 1005
Query 957 ACAAAGTACTTTGGGATTTCGGGTGGTAGCTTACCGGCCATAACCGCGGTTGTTGTTATT 1016
||||||||||| || ||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1006 ACAAAGTACTTCGGAATTTCGGGTGGTAGCTTACCGGCTATAACAGCGGTTGTTGTTATT 1065
Query 1017 TTAGCAACTGTCTTTCCGTCCCAGTTTGGTCGTCTTGCTCCATCTGGAGAAGCCATGGCT 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 TTAGCAACTGTCTTTCCGTCCCAGTTTGGTCGTCTTGCTCCATCTGGAGAAGCCATGGCT 1125
Query 1077 CTGATTCTGATGCAGGTGTTCTTCACAGTGGTGGGTGCAAGCGGAAACATATGGAGTGTG 1136
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1126 CTAATTTTGATGCAGGTGTTCTTCACAGTGGTGGGTGCAAGCGGAAACATATGGAGTGTG 1185
Query 1137 ATCAACACGGCGCCGAGCATATTCTTGTTTGCGTTGGTTCAAATTGGGACACATCTAGCT 1196
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1186 ATCAACACGGCGCCGAGCATATTCTTGTTTGCATTGGTTCAAATTGGGACACATCTGGCT 1245
Query 1197 GTGATATTGGGTATAGGAAAGCTGCTAAACATCGAGCTAAGGTTGCTGCTTCTAGCATCA 1256
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1246 GTGATATTGGGCATAGGAAAGCTGCTAAACATCGAGCTAAGGTTACTGCTTCTAGCATCA 1305
Query 1257 AATGCTAATGTCGGAGGACCCACGACTGCAGCTGGAATGGCGACAGCAAAGGGATGGAAC 1316
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1306 AATGCTAATGTCGGAGGACCCACGACCGCAGCTGGAATGGCGACGGCAAAGGGATGGAAC 1365
Query 1317 TCGTTGATAGTTCCAGGGATTCTGGCGGGAATATTTGGGATTGCCATTGCAACTTTCCTA 1376
|||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||| ||
Sbjct 1366 TCGTTGATAGTTCCCGGGATTCTGGCCGGAATATTTGGGATCGCCATTGCAACTTTCATA 1425
Query 1377 GGAATTGCATTTGGAGTTAAAGTTCTCAAGTTCATGTGAAGATGGTAATATAACTAAACT 1436
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1426 GGAATTGCATTTGGAGTTAAAGTTCTTAAGTTCATGTGAAGATGGTAGTATAACTAAACT 1485
Query 1437 ATGG 1440
||||
Sbjct 1486 ATGG 1489
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70983570630
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5