BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949820
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38860.2 | Symbols: YLS5 | Class I glutamine amidotransferas... 241 3e-63
> AT2G38860.2 | Symbols: YLS5 | Class I glutamine amidotransferase-like
superfamily protein | chr2:16233315-16235234 REVERSE
LENGTH=1538
Length=1538
Score = 241 bits (130), Expect = 3e-63
Identities = 219/258 (85%), Gaps = 21/258 (8%)
Strand=Plus/Plus
Query 44 TGTAGAAGATTATGGGATCAATATACCATTTAGAGCACTTCAAGCTTTAGGATGTAAAGG 103
|||||||||||||||||||||| |||| ||||||||||| ||||||||||| |||||||
Sbjct 684 TGTAGAAGATTATGGGATCAATGTACCGTTTAGAGCACTACAAGCTTTAGGTTGTAAAGT 743
Query 104 GGATACAGTGACACCGAATAAGAAGAAGGGAGAAGTGTGTGCAACGGTGGTTTATGACCT 163
|||| | ||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 744 GGATGCTGTGACACCGAACAAGAAGAAGGGAGAAGTGTGTGCAACGGCGGTTTATGACCT 803
Query 164 CGAGGATGAA----AG---C-T-----------TGGACA-A-CTTCTTTGTGACTGCATC 202
||||||| | || | | |||||| | ||||||||||||||||||
Sbjct 804 TGAGGATGGACGGCAGATTCCTGCAGAGAAGCGTGGACATAACTTCTTTGTGACTGCATC 863
Query 203 GTGGGATGGTGTATGTGTGGATGATTATAACTGTGTAGTGCTTCCAAGAGGGAGATAACG 262
|||||||| | ||||||||||||||||| ||||||||||| ||||| ||||||||| ||
Sbjct 864 GTGGGATGATATATGTGTGGATGATTATGACTGTGTAGTGGTTCCAGGAGGGAGATCACC 923
Query 263 TGAGCTATTGGTGATGAA 280
||||||||||||||||||
Sbjct 924 TGAGCTATTGGTGATGAA 941
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12868543744
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5