BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949822

Length=1076
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G20095.3 | Symbols:  | Protein of unknown function (DUF626) ...  62.1    1e-08


> AT4G20095.3 | Symbols:  | Protein of unknown function (DUF626) 
| chr4:10871643-10873615 REVERSE LENGTH=1152
Length=1152

 Score = 62.1 bits (33),  Expect = 1e-08
 Identities = 37/39 (95%), Gaps = 0/39 (0%)
 Strand=Plus/Plus

Query  414  CTCTTTGGTAAAGTTGGACTTCATTGCTACAATCTGCAA  452
            ||||| |||| ||||||||||||||||||||||||||||
Sbjct  402  CTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAA  440



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 52710572250


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5