BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949826
Length=1090
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52610.1 | Symbols: | F-box and associated interaction doma... 1271 0.0
AT1G19160.1 | Symbols: | F-box family protein | chr1:6614162-6... 704 0.0
> AT5G52610.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:21346423-21347478 REVERSE LENGTH=1056
Length=1056
Score = 1271 bits (688), Expect = 0.0
Identities = 946/1067 (89%), Gaps = 31/1067 (3%)
Strand=Plus/Plus
Query 21 ATG-TTTACTGAAGACCTTTTGGTCGAAATTCTCTTAAGATTGCCTGTGAAAACCCTAGC 79
||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 ATGATTT-CTGAAGACCTTTTGGTCGAAATTCTCTTAAGATTGCCTGTGAAACCCCTAGC 59
Query 80 GATATGTCTATGTGTGTCCAAGCTTTTGGCCTCAATCATCCGCAGTCGACATTTCATCAA 139
| ||| |||||||||| |||||||| |||| ||||||||||||||||| ||||||||||
Sbjct 60 TAGATGCCTATGTGTGTGCAAGCTTTGGGCCACAATCATCCGCAGTCGATATTTCATCAA 119
Query 140 CTTATACCAATCTCGATCCTCTACTCATCAGCAACATGTCATGTTTGCTTTACGTGATAT 199
|||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||
Sbjct 120 CTTATACCAATCTCGATCCTCTACTCGTCAGCCATATGTCATGTTTGCTTTACGTGATAT 179
Query 200 ATTCACGTTTTCTCGTTGGCATTTCTTCTTATCATCCCAACCTTCTTTGGTTACCAATGC 259
|||||| | || ||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 180 ATTCACATCTTGTCGTTGGCATTTCTTCTCGTCATCCCAACCTTCTTTGGTTACCAAGGC 239
Query 260 GATATGCTGCGTCGATAATACTTCTC-TCACGCCTGATTGCGTCAATGGCTTGATATGTC 318
|| |||| ||| | ||||| |||||| | ||||||||||| ||||||||||||||||||
Sbjct 240 GACATGCAGCGCCAATAATTCTTCTCAT-ACGCCTGATTGTGTCAATGGCTTGATATGTG 298
Query 319 TCGAAGACATG-CATCGATTGTGGATATACAATCCTGCCACGAGAAAAGGCGTACTTTTG 377
||||| ||||| | || | ||||||||| ||||||||||||| | || || ||||| ||
Sbjct 299 TCGAATACATGTC-TCAACTGTGGATATCCAATCCTGCCACGCGTAAGGGTGTACTCGTG 357
Query 378 CCCCAATCCGCTCC-CTAT-AAACCGTTTAGGAAATGGTATATGGGATACGATCCTATCA 435
|||||||||||||| | || ||| ||| |||||||||||||||||||| ||||||||||
Sbjct 358 CCCCAATCCGCTCCAC-ATCAAAA-GTTCAGGAAATGGTATATGGGATATGATCCTATCA 415
Query 436 ATTATCAATATAAGGTATTGTTTTTCTCAAAAGAAAAGTTAGTATGTCCCTATAAAGTGG 495
|||||||||| ||||| ||||||||||||||| || | ||| ||| |||||||||| |||
Sbjct 416 ATTATCAATACAAGGTTTTGTTTTTCTCAAAACAATATTTATTATCTCCCTATAAACTGG 475
Query 496 AAGTGTTTACATTGGGAGGTCAAGGTTCATGGAAAATGATTGAGGTTGAGAATAATCATT 555
||||||||||||||| |||||||||||||||||||||||| ||||||||||||| || ||
Sbjct 476 AAGTGTTTACATTGGAAGGTCAAGGTTCATGGAAAATGATCGAGGTTGAGAATATTCCTT 535
Query 556 CTCCCGCAACCAGAGGAGTATGCATCGATGGGGTTGTGTATTACGGTTCTCACACGGCGC 615
||||| ||||||||||| ||||||||||||||||||||||||||||| |||| |||||||
Sbjct 536 CTCCCTCAACCAGAGGAATATGCATCGATGGGGTTGTGTATTACGGTGCTCAGACGGCGC 595
Query 616 ATGGACTGAGACTTGAGAGATTCTATGTGGCGACGGAAAAGTTTGGTAATTTCATTGAAA 675
|||||||||| |||| |||||||| ||||| || |||||||||||| ||||||||||||
Sbjct 596 ATGGACTGAGGCTTGTTAGATTCTACGTGGCTACTGAAAAGTTTGGTGATTTCATTGAAA 655
Query 676 TACCGGTCGAGGCTAGTAACT-TTTATGGTTT---CTTT----AC-CT----TTGTGAAC 722
||||||||| ||||||||| | |||||| | | |||| || || ||||||||
Sbjct 656 TACCGGTCGGGGCTAGTAA-TGTTTATGATATGAACTTTGGTTACTCTAAACTTGTGAAC 714
Query 723 TACCAAGGGAAACTAGCTTTACTTGTTACAAAAAATATTAACATGTATGATTTATGGGTT 782
|| |||||||||||||||||||||| | |||||| ||| | |||||||||||||||||||
Sbjct 715 TATCAAGGGAAACTAGCTTTACTTGCTGCAAAAAGTATGAGCATGTATGATTTATGGGTT 774
Query 783 TTGGAAGTTGCCGGGAAACAAGAATGGTCTAAGGTTTCTATCGTTTTACCTCGAGAGTTG 842
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 775 TTGGAAGATGCCGGGAAACAAGAATGGTCTAAGGTTTCTATCGTTTTAACTCGAGAGATG 834
Query 843 TTCTCGTATGATCTTGTTTGTCTAGAGTTAGTTGG-TTTTGTTGCTGGTAGTGGTGAGCT 901
|| ||||||||||||||||| |||| || | ||| ||||||||||||||||| ||||||
Sbjct 835 TTTTCGTATGATCTTGTTTGGCTAG-GTGCGGTGGGTTTTGTTGCTGGTAGTGATGAGCT 893
Query 902 TATAGTTACAGCTCGTGATCAATCTTATCATCTTTATCTTGTCTATGTTGATCTCAAGAT 961
|||||||||||||| ||||| || |||||| ||||||||||||||||||||||||||||
Sbjct 894 TATAGTTACAGCTCATGATCGATTTTATCAGATTTATCTTGTCTATGTTGATCTCAAGAT 953
Query 962 GAAACGTTCAAAT-ACAGTTTGGCTTGGGGGGATCAGATGCTCATATCGACCATCTTTAT 1020
||||||||||| | ||||||||| || ||||||||||||||| ||||| ||||||||
Sbjct 954 GAAACGTTCAAGGGA-AGTTTGGCTCGGAGGGATCAGATGCTCAGATCGATCATCTTTA- 1011
Query 1021 TAGTGCTTACTTTCACGGATTACGTTGAAAGTATTATGTTTTTGTAA 1067
|||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1012 --GTGCTTACTTTCACGGATTACGTTGAAAGTATTATGTTATTGTAA 1056
> AT1G19160.1 | Symbols: | F-box family protein | chr1:6614162-6615214
REVERSE LENGTH=1053
Length=1053
Score = 704 bits (381), Expect = 0.0
Identities = 853/1072 (80%), Gaps = 68/1072 (6%)
Strand=Plus/Plus
Query 21 ATGTTTACTGAAGACCTTTTGGTCGAAATTCTCTTAAGATTGCCTGTGAAAACCCTAGCG 80
||| || ||||||||| |||||||||||||||| ||||||||||||||||| | ||||||
Sbjct 1 ATGATTCCTGAAGACCCTTTGGTCGAAATTCTCCTAAGATTGCCTGTGAAATCACTAGCG 60
Query 81 ATATGTCTATGTGTGTCCAAGCTTTTGGC--CTCAATCATCCGCAGTCGACATTTCATCA 138
| || |||||| || ||||||| || || |||||||||||||||||||||||||||||
Sbjct 61 AGATTTCTATGCGTATCCAAGC-GTT-GCTACTCAATCATCCGCAGTCGACATTTCATCA 118
Query 139 ACTTATACCAATCTCGATCCTCTACTCATCAG-CAACATGTCATGTTTGCTTTACGTGAT 197
||||||||||||||||| ||||||||| | || || | ||||||||||||||| ||||||
Sbjct 119 ACTTATACCAATCTCGAGCCTCTACTCGTGAGTCA-CGTGTCATGTTTGCTTTCCGTGAT 177
Query 198 ATATTCACGTTTTCTCGTTGGCATTTCTTCTTATCATCCCAACC---TTCTTTGGTTACC 254
| | ||| |||| ||| ||| ||||||||| | ||| ||||| ||||| ||||||
Sbjct 178 ACAAACACATTTTTTCGCTGGAATTTCTTCTCGTTATCTCAACCACCTTCTTCAGTTACC 237
Query 255 AATG-CGATATGCTGCGTCGATAATACTTCTCTCACGCCTGATTGCGTCAATGGCTTGAT 313
||| ||||| | | | || | || || | | ||||| ||||||||||||||||||
Sbjct 238 AATATCGATA-G-TACTTC--T--TA-TTGTAT---GCCTGTTTGCGTCAATGGCTTGAT 287
Query 314 ATGTCTCGAAGACATGCATCGATTGTGGATATACAATCCTGCCACGAGAAAAGG-CGTAC 372
|||| ||||| ||||| |||| ||||||||| |||||||| ||||| ||||| | ||
Sbjct 288 ATGTGTCGAACACATGTTTCGACTGTGGATATGCAATCCTGTCACGA-AAAAGATCACAC 346
Query 373 TTTTGCCCCAATCCGCTCCCTATAAACCGTTTAGGAAATGGTATATGGGATACGATCCTA 432
|||| ||| | | || |||| ||||| || | || ||||||||||||||| ||||| |
Sbjct 347 TTTTTCCCGATTGCGGTCCCCGTAAACAATTCACGACATGGTATATGGGATATGATCCAA 406
Query 433 TCAATTATCAATATAAGGTATTGTTTTTCTCAAAAGAAAAGTTAGTATG-TCCCTATAAA 491
||||||||||||| ||||| |||| ||| |||| |||| | ||| || | ||| |||| |
Sbjct 407 TCAATTATCAATACAAGGTCTTGTATTTGTCAAGAGAACATTTAATA-GCTCCTTATATA 465
Query 492 GTGGAAGTGTTTACATTGGGAGGTCAAGGTTCATGGAAAATGATTGAGGT---TGAGAAT 548
||||||||||| ||||| |||| | ||||||| |||| |||||| |||| |||||||
Sbjct 466 GTGGAAGTGTTCACATTTGGAGATGAAGGTTCGTGGAGAATGATCGAGGCCGATGAGAAT 525
Query 549 AATC-ATTCTCCCGCAACCAGAGGAGTATGCATCGATGGGGTTGTGTATTACGGTTCTCA 607
|| | ||||| | ||||||||||||||||| | | |||||| ||||||| ||| || |
Sbjct 526 T-TCCACTCTCCAGAAACCAGAGGAGTATGCACCCACGGGGTTCTGTATTATGGTGCTTA 584
Query 608 CACGGCGCATGGA-CTGAGACTTGAGAGATTCTATGTG-GCGACGGAAAAGTTTGGTAAT 665
|||| | ||||| | || | ||| ||| ||| ||||| | ||||||||||||||||||
Sbjct 585 TACGGGGGATGGAGC-GAAAATTGTGAGGTTCGATGTGAG-GACGGAAAAGTTTGGTAAG 642
Query 666 TTCATTGAAATACCGGTCGAGGCTAGTA--A--C-T--T-T-TAT--GGTT-TCTTTACC 713
||||||||||| |||| ||||||| ||| | | | | | ||| || | ||| ||||
Sbjct 643 TTCATTGAAATGCCGGCCGAGGCTTGTAGTATTCATGGTGTCTATTTGGGTCTCTATACC 702
Query 714 -TTTGTGAACTACCAAGGGAAACTAGCTTTACTTGTTACAAAAAATATTAA-CATGTATG 771
||| || ||||||||||||| ||| |||||||| |||| || || || || ||||
Sbjct 703 CTTT-TGGACTACCAAGGGAAGTTAGGTTTACTTGCTACACAAGCTAC-AAGCACATATG 760
Query 772 ATTTATGGGTTTTGGAAGTTGCCGG-GAAACAAGAATGGTCTAAGGTTTCTATCGTTT-T 829
|||||||||||||||||| ||| || |||||| || |||||||||||||||||| || |
Sbjct 761 ATTTATGGGTTTTGGAAGATGC-GGAGAAACATGAGTGGTCTAAGGTTTCTATC-TTCAT 818
Query 830 ACCTCGAGAGTTGT-TCTCGTATGATCTTGTTTGTCTAGAGT-TAGTTGGTTTTGTTGCT 887
| |||||||| ||| || ||||||||||| |||| | || || | || ||||||||||||
Sbjct 819 AACTCGAGAGATGTGTC-CGTATGATCTTATTTGGCCAG-GTGTGGTGGGTTTTGTTGCT 876
Query 888 GGTAGTGGTGAGCTTATAGTTACAGCTCGTGATCAATCTTA-TCATCTTT-ATCTTGTCT 945
||||||||||||||||||||||| ||||||||| | ||| ||| ||| || || |||
Sbjct 877 GGTAGTGGTGAGCTTATAGTTACTGCTCGTGATGAG-CTTGGTCAG-TTTCATATTCTCT 934
Query 946 ATGTTGATCTCAAGATGAAACGTTCAAAT-ACAGTTTGGCTTGGGGGGA-TCAGATGCTC 1003
||||||||||||||| ||| ||||| | | ||||||| || | | | ||| | |||
Sbjct 935 ATGTTGATCTCAAGAAGAATCGTTCGAGGGA-AGTTTGG-TTCGAAGAAATCACACCCTC 992
Query 1004 ATATCGACCATCTTTATTAGTGCTTACTTTCACGGATTACGTTGAAAGTATT 1055
| | || || || | |||||| ||||||||||||||||||||||||||
Sbjct 993 GTTTGGATCAGCTCTG---GTGCTTGCTTTCACGGATTACGTTGAAAGTATT 1041
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53413379880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5