BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949828
Length=1808
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52630.1 | Symbols: MEF1 | mitochondrial RNAediting factor 1... 2699 0.0
AT1G11290.1 | Symbols: CRR22 | Pentatricopeptide repeat (PPR) s... 54.7 3e-06
> AT5G52630.1 | Symbols: MEF1 | mitochondrial RNAediting factor
1 | chr5:21350375-21352141 FORWARD LENGTH=1767
Length=1767
Score = 2699 bits (1461), Expect = 0.0
Identities = 1668/1770 (94%), Gaps = 6/1770 (0%)
Strand=Plus/Plus
Query 22 ATGGCTCTGAATTCTTCAGCTTTCTTCGTTCCATGTCACAATTACAATCAAATTTGTGAT 81
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGCTCTGAATTCTTCAGCTTTCTTCGTTCCATGTCACAATTACAATCAAATCTGTGAT 60
Query 82 CTTCTTCTTTCTTCAGCTAGATCCAGATCCATTGTTAAAGGACTTCAGCTTCATGGCTAT 141
|||||||||||||||||| || ||||||| | | ||||||||||||||||||||||||||
Sbjct 61 CTTCTTCTTTCTTCAGCTCGAACCAGATCAACTATTAAAGGACTTCAGCTTCATGGCTAT 120
Query 142 ATCGTTAAATCAGGCCTTTCTCTTATCCCTCTCGTCGCTAACAATCTCATTAATTTCTAC 201
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 GTCGTTAAATCAGGCCTTTCTCTTATCCCTCTCGTCGCTAACAACCTCATTAATTTCTAC 180
Query 202 TCCAAATCACAGCTTCCGTTTGATTCTCGTCGAGCTTTTGAAGATAGCCCACAAAAGAGT 261
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 TCCAAATCACAGCTTCCGTTTGATTCTCGTCGAGCTTTTGAAGATAGCCCACAAAAAAGT 240
Query 262 GCGACGACTTGGAGTTCAATCATCTCTTGTTTTGCTCAGAACGAGCTTCCATGGATGTCA 321
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 TCGACGACTTGGAGTTCAATCATCTCTTGTTTTGCCCAGAACGAGCTTCCATGGATGTCA 300
Query 322 CTCGAGTTTCTTAGGAAAATGATGGCGGGAAGCCTTAGACCTGATGATCATGTTCTTCCG 381
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 301 CTCGAGTTTCTTAAAAAAATGATGGCGGGAAACCTTAGACCTGATGATCATGTTCTTCCA 360
Query 382 TCTGCGACGAAGTCTTGTG-GAATTTTGAGTCGTTGTGATATTGGGAGATCGGTTCATTG 440
|| || || ||||| |||| | ||||||||||||||||||||||| ||||| ||||||||
Sbjct 361 TCAGCTACAAAGTCGTGTGCG-ATTTTGAGTCGTTGTGATATTGGTAGATCAGTTCATTG 419
Query 441 TCTTTCGATGAAGACTGGGTATGATGCTGATGTGTTCGTAGGGAGTTCTTTGGTTGATAT 500
||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 420 TCTATCGATGAAGACTGGGTATGATGCTGATGTGTTTGTGGGGAGTTCTTTGGTTGATAT 479
Query 501 GTATGCGAAATGTGGAGAAATTGTTTATGCGAGGAAGATGTTCGACGAAATGCCTCTGAG 560
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 480 GTATGCGAAATGTGGAGAAATTGTTTATGCGAGGAAGATGTTCGACGAAATGCCTCAGAG 539
Query 561 AAATGTTGTTACTTGGAGTGGGATGATGTATGGGTATGCTCAAATGGGTGAAAATGAGGA 620
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 540 AAATGTTGTTACTTGGAGTGGGATGATGTATGGGTATGCACAAATGGGTGAAAATGAGGA 599
Query 621 AGCTTTGTGGTTGTTTAAAGAAGCTTTGTTTGAAAATCTCGCTGTTAATGATTACTCGTT 680
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 600 AGCTTTGTGGTTGTTTAAAGAAGCTTTGTTTGAGAATCTCGCTGTTAATGATTACTCGTT 659
Query 681 TTCGACTGTTATTAGTGTTTGTGCCAATTCGACTTTACTTGAGTTAGGTAGACAGATTCA 740
||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 660 TTCGAGTGTTATTAGTGTTTGTGCAAATTCGACTCTACTTGAGTTAGGTAGACAGATTCA 719
Query 741 GGGGTTGTGTATTAAGTCCAGCTTTGACTCGTCTAGTTTTGTGGGAAGTTCGTTAGTCTC 800
|| ||| |||||||||| |||||||| || ||||| |||||||||||||| ||||||||
Sbjct 720 TGGATTGAGTATTAAGTCTAGCTTTGATTCTTCTAGCTTTGTGGGAAGTTCTTTAGTCTC 779
Query 801 ATTGTATTCGAAA-TGTGGTGATCTTGAAGGAGCTTATCAAGTTTTTGATGAGGTGCCTA 859
|||||||| ||| ||||||| || |||||||||||||||||||||| | |||||||||
Sbjct 780 GTTGTATTC-AAAGTGTGGTGTTCCTGAAGGAGCTTATCAAGTTTTTAACGAGGTGCCTG 838
Query 860 TGAGGAATCTCGGGATTTGGAACGCGATGCTTAAGGCTTGTGCGCAACATTCACATACTC 919
||| ||||||||||||||||||||| ||||| ||||| | ||||||||||||||||||||
Sbjct 839 TGAAGAATCTCGGGATTTGGAACGCTATGCTCAAGGCGTATGCGCAACATTCACATACTC 898
Query 920 AAAAGGTTATTGAATTGTTCAAGCGGATGAAACTCTCTGGAATGAAACCAAATTTTATAA 979
|||||||||||||||||||||| ||||||| || |||||||||||||||||||| ||||
Sbjct 899 AAAAGGTTATTGAATTGTTCAAAAGGATGAAGCTTTCTGGAATGAAACCAAATTTCATAA 958
Query 980 CTTTTCTGAATGTGCTCAATGCTTGTAGCCACGCGGGTCTAGTAGATGAAGGGAAATACT 1039
||||| |||||||||||||||||||||| |||||||||||||| |||||||||| |||||
Sbjct 959 CTTTTTTGAATGTGCTCAATGCTTGTAGTCACGCGGGTCTAGTTGATGAAGGGAGATACT 1018
Query 1040 ACTTTGATCTGATGAAAGAATCGAGAATTGAGCCGACGGATAAGCATTACGCTTCCTTGG 1099
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1019 ACTTTGATCAGATGAAAGAATCGAGGATTGAGCCGACGGATAAGCATTACGCTTCCTTGG 1078
Query 1100 TGGATATGCTGGGACGAGCTGGTAAACTAGAAGAAGCACTTGAAAT-AGTCACGAATATG 1158
|||||||| | ||||||||||||| | || |||||||||||||| | | |||| ||||||
Sbjct 1079 TGGATATGTTAGGACGAGCTGGTAGATTACAAGAAGCACTTGAAGTTA-TCACTAATATG 1137
Query 1159 CCAATCGATCCCACGGAATCTGTATGGGGAGCTTTATTAACGAGTTGTACAATCCACAAG 1218
|| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1138 CCGATTGATCCCACGGAATCTGTATGGGGAGCTTTATTAACGAGTTGTACAGTCCACAAG 1197
Query 1219 AACACAGAACTTGCAGCATTTGCAGCAGACAAGGTCTTCGAATTAGGACCAGTGAGTTCC 1278
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 AACACAGAGCTTGCAGCATTTGCAGCAGACAAGGTCTTCGAATTAGGACCAGTGAGTTCC 1257
Query 1279 GGTATGCACATTTCTTTATCCAATGCTTATGCAGCTGATGGTAGATTCGAAGACGCAGCC 1338
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1258 GGTATGCACATTTCGTTATCCAATGCTTATGCAGCCGATGGTAGATTCGAAGACGCAGCT 1317
Query 1339 AAAGCTAGAAAATTGCTCCGAGACCGAGGGGAAAAGAAGGAAACAGGGCTAAGTTGGGTT 1398
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 AAAGCTAGAAAATTGCTTCGAGACCGAGGGGAAAAGAAGGAAACAGGGCTAAGTTGGGTT 1377
Query 1399 GAAGAAAGGAACAAAGTTCATACATTTGCAGCTGGAGAAAGACGACACGAGAGAAGCAAG 1458
|||||||||||||| ||||||||||||||||||||||||||||| || |||| |||||||
Sbjct 1378 GAAGAAAGGAACAAGGTTCATACATTTGCAGCTGGAGAAAGACGTCATGAGAAAAGCAAG 1437
Query 1459 GAGATATATGAGAAGCTGGCTGAGTTAGGGGAAGAGATGGAGAAAGCGGGTTATGTTGCA 1518
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1438 GAGATATATGAGAAGCTGGCTGAGTTAGGGGAAGAGATGGAGAAAGCGGGTTACATTGCA 1497
Query 1519 GACACAAGCTATGTTCTGAGAGAAGTGGATGGTGATGAGAAGAATCAGACAATAAGGTAT 1578
||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 1498 GACACAAGCTATGTTCTGAGAGAAGTGGATGGTGACGAGAAGAATCAAACCATAAGGTAT 1557
Query 1579 CATAGCGAGAGATTAGCTATTGCTTTTGGGCTGATCGCGTTTCCGGCTGATAGACCGATC 1638
||||| ||||||||||||||||||||||| |||||| ||||||| |||||||||||||||
Sbjct 1558 CATAGTGAGAGATTAGCTATTGCTTTTGGACTGATCACGTTTCCAGCTGATAGACCGATC 1617
Query 1639 CGGGTGATGAAGAATCTGCGTGTTTGCGGCGATTGCCATAATGCGATCAAGTTCATGTCC 1698
|| || ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1618 CGAGTAATGAAGAATCTGCGTGTTTGCGGTGATTGCCATAACGCGATCAAGTTCATGTCC 1677
Query 1699 ATATGTACGGGACGAGTGATCATTGTGAGAGATAACAATCGGTTTCATCGGTTTGAAGAT 1758
|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1678 GTATGTACGAGACGAGTGATCATTGTGAGAGATAATAATCGGTTTCATCGGTTTGAAGAT 1737
Query 1759 GGCAAATGTTCTTGTAATGACTATTGGTGA 1788
||||| ||||||||||||||||||||||||
Sbjct 1738 GGCAAGTGTTCTTGTAATGACTATTGGTGA 1767
> AT1G11290.1 | Symbols: CRR22 | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:3791454-3793883 REVERSE LENGTH=2430
Length=2430
Score = 54.7 bits (29), Expect = 3e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 488 CTTTGGTTGATATGTATGCGAAATGTGGA 516
|||||||||||||||||||||||||||||
Sbjct 827 CTTTGGTTGATATGTATGCGAAATGTGGA 855
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89457371190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5