BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949843
Length=1464
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52820.1 | Symbols: | WD-40 repeat family protein / notchle... 2462 0.0
> AT5G52820.1 | Symbols: | WD-40 repeat family protein / notchless
protein, putative | chr5:21401349-21404385 FORWARD LENGTH=1678
Length=1678
Score = 2462 bits (1333), Expect = 0.0
Identities = 1423/1467 (97%), Gaps = 3/1467 (0%)
Strand=Plus/Plus
Query 1 TCTTTGCGAAACTCATCGTCGACGATGAGC---ATGGATACAGACGAAGGGAAGACGGTG 57
|||||||||| ||||||||||||||||| | ||||||||||||||||||||||| |||
Sbjct 51 TCTTTGCGAAGCTCATCGTCGACGATGACCATGATGGATACAGACGAAGGGAAGACAGTG 110
Query 58 ATGTGTCTGTTAACAGACCCAGAAGGAACTCATTTAGGTTCTGCCATGTATATTCCTCAA 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 111 ATGTGTCTGTTAACAGACCCAGAAGGAACTCATTTAGGTTCTGCCATGTATATTCCTCAA 170
Query 118 AATGCTGGTCCTTTGCAACTTACTCAGCTCGTCAATAGGTTCCTCGACAACGAGGAGATG 177
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 171 AAGGCTGGTCCTTTGCAACTTACTCAGCTCGTCAATAGGTTCCTTGACAACGAGGAGATG 230
Query 178 TTACCTTACAGTTTCTATGTATCAGACGAAGAGCTTCTTGTACCTGTTGGAACTTACTTA 237
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 231 TTACCTTACAGTTTCTATGTATCAGACGAAGAGCTTCTTGTACCAGTTGGAACGTACTTG 290
Query 238 GAGAAAAACAAAGTGTCTGTGGAGAAGGTTTTGACGATTGTTTATCAACAACAAGCTGTT 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 GAGAAAAACAAAGTGTCTGTGGAGAAGGTTTTGACGATTGTTTATCAACAACAAGCTGTT 350
Query 298 TTTCGAATTCGTCCAGTTAACCGTTGCTCACAGACAATTGCTGGTCACGCGGAAGCTGTT 357
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 TTTCGAATTCGTCCTGTTAACCGTTGCTCACAGACAATTGCTGGTCACGCGGAAGCTGTT 410
Query 358 CTTTGTGTTTCGTTTAGTCCTGATGGTAAGCAGTTAGCTAGTGGTTCAGGTGATACTACT 417
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 411 CTTTGTGTTTCGTTTAGTCCTGATGGAAAGCAATTAGCTAGTGGTTCAGGTGATACTACT 470
Query 418 GTCAGGCTTTGGGATCTCTACACTGAAACTCCATTGTTTACTTGCAAAGGGCACAAGAAT 477
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 471 GTCAGGCTTTGGGATCTCTACACTGAAACTCCATTGTTTACTTGCAAAGGCCACAAGAAT 530
Query 478 TGGGTTCTCACAGTTGCGTGGTCTCCGGATGGTAAGCATCTTGTGAGTGGTAGTAAATCC 537
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 531 TGGGTTCTCACAGTTGCGTGGTCTCCTGATGGTAAGCATCTTGTGAGTGGTAGTAAATCC 590
Query 538 GGTGAAATCTGTTGTTGGAATCCAAAGAAAGGAGAACTAGAAGGCAGTCCACTTACAGGT 597
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 591 GGTGAAATCTGTTGTTGGAATCCAAAGAAAGGAGAACTAGAAGGCAGCCCACTTACGGGT 650
Query 598 CATAAGAAATGGATTACTGGTATCTCGTGGGAACCAGTCCACCTTAGTTCTCCATGCCGT 657
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 CACAAGAAATGGATTACTGGTATCTCGTGGGAACCAGTCCACCTTAGTTCTCCATGCCGT 710
Query 658 CGATTTGTAACTTCTAGTAAAGATGGGGATGCAAGGATTTGGGATATTACACTGAAAAAA 717
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 CGATTTGTGACTTCTAGTAAAGATGGGGATGCAAGGATTTGGGATATTACACTGAAAAAA 770
Query 718 TCTATAATTTGTCTCAGTGGACACACTCTTGCTGTGACTTGTGTCAAATGGGGCGGAGAT 777
||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 771 TCTATTATTTGTCTCAGTGGGCACACACTTGCTGTGACTTGTGTCAAATGGGGCGGAGAT 830
Query 778 GGAATTATTTATACAGGTTCCCAAGATTGTACGATAAAGATGTGGGAGACTACTCAGGGG 837
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 831 GGAATTATTTATACAGGTTCGCAAGATTGTACGATTAAGATGTGGGAGACTACTCAGGGG 890
Query 838 AAGCTCATTCGTGAATTGAAGGGGCATGGGCATTGGATTAACTCCCTTGCATTGAGCACA 897
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 891 AAGCTTATTCGTGAATTGAAGGGGCATGGGCATTGGATTAACTCCCTTGCGTTGAGCACA 950
Query 898 GAATATGTTCTTCGAACAGGAGCTTTTGACCACACTGGAAGACAATATCCTCCAAATGAA 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 GAATATGTTCTTCGAACAGGAGCTTTTGACCACACTGGAAGACAATATCCTCCAAATGAA 1010
Query 958 GAAAAGCAAAAGGCGCTCGAAAGATACAACCAAACAAAAGGGGATTCCCCTGAAAGATTA 1017
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1011 GAAAAGCAAAAGGCGCTCGAAAGATACAACAAAACAAAAGGGGATTCCCCTGAAAGATTA 1070
Query 1018 GTTTCAGGTTCTGATGATTTCACTATGTTCCTTTGGGAACCATCTGTTAGCAAACAACCT 1077
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 GTCTCAGGTTCTGATGATTTCACTATGTTCCTTTGGGAACCATCTGTTAGCAAACAACCT 1130
Query 1078 AAAAAGCGCTTGACCGGCCATCAACAACTTGTAAATCATGTCTATTTCTCACCTGATGGG 1137
||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1131 AAAAAGCGCTTAACCGGTCATCAACAGCTTGTAAATCATGTCTATTTCTCACCTGATGGG 1190
Query 1138 AAATGGATTGCAAGTGCATCGTTCGATAAATCAGTTAGGCTATGGAATGGTATCACAGGA 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 AAATGGATTGCAAGTGCATCGTTCGATAAATCAGTTAGGCTATGGAATGGTATCACAGGA 1250
Query 1198 CAATTCGTTACAACTTTCCGGGGCCATGTTGGACCTGTGTATCAGGTCAGTTGGTCCGCA 1257
||||| |||||| ||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1251 CAATTTGTTACAGTTTTCCGGGGACATGTTGGACCTGTTTATCAGGTCAGTTGGTCCGCA 1310
Query 1258 GACAGTAGATTGCTATTGAGTGGCAGTAAAGACTCTACTCTCAAGATATGGGAAATTAGG 1317
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 GACAGTAGATTGCTTTTGAGTGGCAGTAAAGACTCTACTCTCAAGATATGGGAAATTAGG 1370
Query 1318 ACTAAAAAGTTAAAACAAGATCTTCCTGGTCATGCAGATGAGGTTTTCGCGGTGGATTGG 1377
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1371 ACGAAAAAGTTAAAACAAGATCTTCCTGGTCATGCAGATGAGGTTTTTGCGGTGGATTGG 1430
Query 1378 AGTCCAGATGGTGAGAAAGTAGTTTCTGGTGGTAAAGATAGAGTTTTGAAGCTATGGAAG 1437
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1431 AGTCCAGATGGAGAGAAAGTAGTTTCTGGTGGTAAAGATAGAGTGTTGAAGCTATGGAAG 1490
Query 1438 GGTTAAAATGGAACATCATTTTGGAGT 1464
||||||||||||| | |||||||||||
Sbjct 1491 GGTTAAAATGGAAGACCATTTTGGAGT 1517
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72188383710
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5