BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949849
Length=251
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34655.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 279 6e-75
> AT2G34655.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: stem, root,
inflorescence, cultured cell, leaf; Has 35333 Blast hits
to 34131 proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses -
0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:14596631-14597540
FORWARD LENGTH=910
Length=910
Score = 279 bits (151), Expect = 6e-75
Identities = 219/250 (88%), Gaps = 11/250 (4%)
Strand=Plus/Plus
Query 5 TTTGATTTGTTCTTAGATGGCTTCTGTCGTTTTTGTGGGTATGCCGTCTCTGTTGCTAGT 64
||||| | ||||||||||||||| ||| |||||||||||| || |||||||||||||||
Sbjct 190 TTTGAATGGTTCTTAGATGGCTTATGTTGTTTTTGTGGGT-TG--GTCTCTGTTGCTAGT 246
Query 65 AGCGCCTTTTGATCCGGTCTTTTGTGTTTTAGCCTTCGTCTCGTTTAGCCTCTTACCA-G 123
||||||| ||||||||||| ||||||| |||| ||||||||||||| |||||| |
Sbjct 247 AGCGCCTCTTGATCCGGTC----ATGTTTTAACCTTATTCTCGTTTAGCCTTTTACCAGG 302
Query 124 ATGTGGTGGTTGCTTTAGATTCTGTCCGGTTCGATCTCTTGCCATTTATCTTGTTCGGTG 183
| ||||||||||||| | ||||||||||||||||||| | || ||| | || |||||||
Sbjct 303 CT-TGGTGGTTGCTTTCGTTTCTGTCCGGTTCGATCTCCTCCCGTTTTTGTTTTTCGGTG 361
Query 184 TGGTCCGGATTGATTTGG-T-TCTCCTTGTCTCTACTCTAAAGATCTGATCGAGATCTCA 241
|||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||
Sbjct 362 TGGTCCGGATTGATTTGGTTCTCTCCTTGTCTTTACTCTAAAGATCTGATCGAGATCTCA 421
Query 242 TCTGTTCATT 251
||||||||||
Sbjct 422 TCTGTTCATT 431
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11410779023
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5