BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949853
Length=1201
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52890.2 | Symbols: | AT hook motif-containing protein | ch... 1696 0.0
> AT5G52890.2 | Symbols: | AT hook motif-containing protein |
chr5:21444835-21447240 REVERSE LENGTH=1639
Length=1639
Score = 1696 bits (918), Expect = 0.0
Identities = 1118/1211 (92%), Gaps = 28/1211 (2%)
Strand=Plus/Plus
Query 3 TTTTAAAGTTGAAAGATCATGGATATTCC--AG-AGA---AGATGGATCAACTGAATCAA 56
|||||||||||||||||||||||||| || || ||| ||||||||||||||||||||
Sbjct 259 TTTTAAAGTTGAAAGATCATGGATATCCCAGAGAAGATGGAGATGGATCAACTGAATCAA 318
Query 57 GGATCGAACTCATCTCTTACCAATAAGCGAAAGAGAGGTCGTCCTCGCAGAGACGAAAGC 116
|| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 319 GGGTCGAGCTCATCTCTTACCAATAAGCGAAAAAGAGGTCGTCCTCGCAGAGACGAAAGC 378
Query 117 CAGACTCAGCTACCAGTGAACCCACTTGTTAGTACTACTATTGACGAGAATCTGATTGGT 176
|||||||||| |||||||||||||| |||| | | | ||||||||||| |||
Sbjct 379 CAGACTCAGCAACCAGTGAACCCACCTGTT-G-------A-T---GAGAATCTGATAGGT 426
Query 177 CAAGTTGTTTCTGGTGTGGTTGAAGGTTCTTTCGAGGCAGGCTATTTTCTCAATGTAAAG 236
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 427 CGAGTTGTTTCTGGTGTGGTTGAAGGTTCTTTTGAGGCAGGCTATTTTCTCAATGTAAAG 486
Query 237 GTTGCTGACACTGAAAAGCAATTGAAAGGCGTTGTTTTCTTACCAGAGAAAGTCACTCCA 296
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 487 GTTGCTGACACGGAAAAGCAATTGAAAGGCGTTGTTTTCTTACCTCAGAAAGTCACTCCA 546
Query 297 GTTACCCCAGCAACTGATCTGTTTCCCCAAGCTAAGATGTATGCAAGAAACGATATCCCG 356
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 547 CTTACCCCAGCAACTGATTTGTTTCCCCAAGCTAAGATGTATGCAAGAAATGATATCCCA 606
Query 357 ATTCCCTCGTT-AAACCAACAAACTCCACTTCAGGGAAAGAAAAACGCTGGGAATCAAAC 415
|||||||| || | ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 607 ATTCCCTC-TTCATACCAACAAACTCCACTTCAGGAAAAGAAAAACGCTGGGAATCAAAC 665
Query 416 TGATGACATCGGTTCTGAGCCTCAAACAGATGCCTTGATTGCTGATAAGAACCAATCTGC 475
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 666 TGATGACATCGGTTCTGAGCCTCAAACAGATGCCTTGATCGCTGATAAGAACCAGTCTGC 725
Query 476 TACTTGCACCACATTGCTGCCCGAT-ATTCATCCAATGAGTGATGCTGGTGTTGGTTCTA 534
|||||||||||||| |||||| ||| | |||||||||||| ||||| ||||||||||||
Sbjct 726 TACTTGCACCACATCGCTGCCTGATGA-TCATCCAATGAGGGATGCGGGTGTTGGTTCTG 784
Query 535 TGGCTATCGGTGAGAGGAATGATCCTATTGATACACTGATGAAAGATGTTGGTGGCTCTT 594
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 785 TGGCTATGGGTGAGAGGAATGATCCTATTGATACACTGATGAAAGATGTTGCTGGCTCTT 844
Query 595 TTGCAGAGGGGAAACTCATTGAACCTGAAAGCCAAACTCTCTCTCTCATGCCACAGTTTG 654
||||||||| ||| |||||||||||| | ||||||| ||||||||||||||||||||||
Sbjct 845 CTGCAGAGGGTAAAGTCATTGAACCTGCAGGCCAAACCCTCTCTCTCATGCCACAGTTTG 904
Query 655 GTAGTGATGGCGTACCCAAAGAAGATCATACTGTTCTGAGATCCGAAGCTTGTGCAGCAA 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 GTAGTGATGGCGTACCCAAAGAAGATCATACTGTTCTGAGATCCGAAGCTTGTGCAGCAA 964
Query 715 GTAAGACACCAGTTACAGTTACTACTACTTCACCTAAAGATTCAATTGCTAAAGGTTCTA 774
|||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 965 GTAAGACAGCAGTTACAGTCACTATTACTTCACCTAAAGATTCAATTGCTAAAGGTTCTA 1024
Query 775 CTACTTTGGTTGATTTCTTTCCAGCACCTGAGGCGACGCGAAAGCTGGCCACGGGATCCA 834
|||||||||||||||||||| |||||||||| || |||||| || |||||| |||||||
Sbjct 1025 CTACTTTGGTTGATTTCTTTTCAGCACCTGAAACGTCGCGAACGCAGGCCACTGGATCCA 1084
Query 835 GCTCTACACTGAACCTTGAACTCTTTCAGAAAGAAACTAAACGATCAGGAACAGAGGATG 894
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1085 GCTCTACACTGAACCTTGAACTCTTTCAGAATCAAACTAAACGATCAGGAACAGAGGATG 1144
Query 895 AGAAATCTTCTGCAGATGCTGAACCTCGTGGAATGGAGGAAAAACCGGCTTCTACTGTTG 954
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1145 AGAAAACTCCTGCAGATGCTGAACCTCGTGGAATGGAGGAAAAACCGGCTTCTACTGTTG 1204
Query 955 AAGATGTGCCAGAGGAACTTCAGCTAGAGCTCGGCAACAAGAAAATGAGTGCATCAGGCA 1014
|||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1205 AAGATGTGCCAGAGGAGCTTCAGCTAGAGCTTGGCAACAAGAACATGAGTGCATCAGGCA 1264
Query 1015 TTGCTACTGAAGCAAATCCTAATCAGTCTGCATCATCAAAGAGCGGGTTATTGGCGAATG 1074
|||||||||||||||||||| ||||||||| ||||||||||||||||| ||||| ||||
Sbjct 1265 TTGCTACTGAAGCAAATCCTGATCAGTCTGTTTCATCAAAGAGCGGGTTCTTGGCAAATG 1324
Query 1075 CTTTTGAAGGAAAAGAAGAAA-CGGCAAAAGAACCAGAAGAATCTAATGCAGCT--TT-A 1130
||||||||||||||||||||| || |||||||||||||||| ||||||||||| || |
Sbjct 1325 CTTTTGAAGGAAAAGAAGAAATCG-CAAAAGAACCAGAAGATTCTAATGCAGCAGCTTCA 1383
Query 1131 GAGAGTGGCTTCCCAGAGGCAACAACACAAGGAGATGATAATGATTCTTGAGAAGTGAAA 1190
||||| |||||||||| |||||||||||||| |||| ||||||||||||| ||||| |
Sbjct 1384 GAGAGCGGCTTCCCAGTGGCAACAACACAAGTCGATGCTAATGATTCTTGAAAAGTGGA- 1442
Query 1191 TGCAACATCAA 1201
|||| ||||||
Sbjct 1443 TGCAGCATCAA 1453
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58985640375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5