BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg949855 Length=244 Score E Sequences producing significant alignments: (Bits) Value AT5G52901.1 | Symbols: | unknown protein; Has 30201 Blast hits... 298 2e-80 > AT5G52901.1 | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:21454426-21454653 FORWARD LENGTH=228 Length=228 Score = 298 bits (161), Expect = 2e-80 Identities = 203/221 (92%), Gaps = 11/221 (5%) Strand=Plus/Plus Query 21 atgggagaggagaggagaaagagagggggagagacagaggTCCCGGGAAGTGTCGGGGTG 80 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1 ATGGGAGAGGAGAGGAGAAAGAGAGGGGGAGAGACAGAGGTCCCGGGAAATGTCGGGGTG 60 Query 81 CGAGACGAATGTTGTCGAAAGATTAGGGAACAAAAGCAGAAAACAGAAAATGACGTGGAG 140 |||||||||||||||||||||||||||| |||||||| |||| |||||| |||||||||| Sbjct 61 CGAGACGAATGTTGTCGAAAGATTAGGGGACAAAAGCCGAAATCAGAAAGTGACGTGGAG 120 Query 141 ACTCATCAAAGTCTTATCTCTGGGGCCATTTTTGCATGGTCTTGTTATGGGTTACGTTTG 200 ||||||||||||||||||||||||||||||||||||||| |||| |||||| Sbjct 121 ACTCATCAAAGTCTTATCTCTGGGGCCATTTTTGCATGG----GTTA-------CGTTTG 169 Query 201 AGAGAGCTTGAAATAAGGTTTTAATTAGTAATACTCCGTAT 241 ||||| || |||||||||||||||||||||||||||||||| Sbjct 170 AGAGAACTCGAAATAAGGTTTTAATTAGTAATACTCCGTAT 210 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 11058904780 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5