BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949855
Length=244
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52901.1 | Symbols: | unknown protein; Has 30201 Blast hits... 298 2e-80
> AT5G52901.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:21454426-21454653
FORWARD LENGTH=228
Length=228
Score = 298 bits (161), Expect = 2e-80
Identities = 203/221 (92%), Gaps = 11/221 (5%)
Strand=Plus/Plus
Query 21 atgggagaggagaggagaaagagagggggagagacagaggTCCCGGGAAGTGTCGGGGTG 80
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 ATGGGAGAGGAGAGGAGAAAGAGAGGGGGAGAGACAGAGGTCCCGGGAAATGTCGGGGTG 60
Query 81 CGAGACGAATGTTGTCGAAAGATTAGGGAACAAAAGCAGAAAACAGAAAATGACGTGGAG 140
|||||||||||||||||||||||||||| |||||||| |||| |||||| ||||||||||
Sbjct 61 CGAGACGAATGTTGTCGAAAGATTAGGGGACAAAAGCCGAAATCAGAAAGTGACGTGGAG 120
Query 141 ACTCATCAAAGTCTTATCTCTGGGGCCATTTTTGCATGGTCTTGTTATGGGTTACGTTTG 200
||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 121 ACTCATCAAAGTCTTATCTCTGGGGCCATTTTTGCATGG----GTTA-------CGTTTG 169
Query 201 AGAGAGCTTGAAATAAGGTTTTAATTAGTAATACTCCGTAT 241
||||| || ||||||||||||||||||||||||||||||||
Sbjct 170 AGAGAACTCGAAATAAGGTTTTAATTAGTAATACTCCGTAT 210
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11058904780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5