BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949862
Length=559
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52960.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 859 0.0
> AT5G52960.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3143 (InterPro:IPR021489);
Has 1807 Blast hits to 1807 proteins in 277 species:
Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants
- 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:21477146-21478437 FORWARD LENGTH=785
Length=785
Score = 859 bits (465), Expect = 0.0
Identities = 528/559 (94%), Gaps = 2/559 (0%)
Strand=Plus/Plus
Query 1 TTTTCTCGGAGAAAATTTTCGTAATCATGAACTGTGTCTCTACATTTGAA-TTGATTCCT 59
||||||||||||||||| ||||||||||||||||||| ||| |||||||| ||| |||||
Sbjct 79 TTTTCTCGGAGAAAATTCTCGTAATCATGAACTGTGTTTCTGCATTTGAATTTG-TTCCT 137
Query 60 TCAAGTGCTCTATTTCCATGTGCAAAATTATCAATCCCTGCGAAATTTCTTCACATTTCG 119
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
Sbjct 138 TCAAGTGCTCTATTTCCATGTGCACAATCATCAATCCCTGCGAAATTTCTTCACATTTTG 197
Query 120 AGCTCAAAAGCCTCAATTTCTCCCAGATGTCGTAGTTTCACTTTTTCTTCTTCTTCCTCA 179
|||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||| ||
Sbjct 198 AGCTCAAAAGCCTCGATTTCTCCCAGATGTCGTAGTTTCGCTTCTTCTTCTTCTTCCACA 257
Query 180 ATTCGGAGGAAACCTTTAACTCTAGTTTCTTCGAAATCGTCAGACGCGGAGGAGGTGTCA 239
||||||||||| ||| |||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct 258 ATTCGGAGGAAGCCTCTAACTCTAGTATCTTCAAAATCTTCAGACGCGGAGGAGGTGTCA 317
Query 240 GATACGGAGGACGAATGGCTGAAGAAGCTACCGGAGAAGAACAAGCCACTGTATTCGCAT 299
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 318 GATACGGAGGACGAATGGCTGAAGAAGCTACCAGAGAAGAACAAGCCACTGTATTCGCAT 377
Query 300 AGCTTACCTTGTATCGAGGCATGGTTGAGGAAATTAGGGTTTTACCAAAGCAAAGACGAT 359
||||||||||||||||| || ||| ||||||||||||||||||||||||| |||||||||
Sbjct 378 AGCTTACCTTGTATCGAAGCGTGGCTGAGGAAATTAGGGTTTTACCAAAGTAAAGACGAT 437
Query 360 AGAGCTGTTTGGTTGATTCAGAAACCTGATTGGCATGCTCAATTATCTCTTGACGTCACA 419
|||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 438 AGAGCTGTTTGGTTGATTCAGAAACCTGATTGGCATGCTCAACTATCTCTTGATGTCACT 497
Query 420 GATCTCTGCATTAGGTACTTGAAAAGCGGGCCGGGGAATCTAGAGAGAGACATGGAAAGA 479
|||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||
Sbjct 498 GATCTCTGCATTAGGTACATGAAAAGTGGGCCGGGAAATCTAGAGAGAGACATGGAAAGA 557
Query 480 AGGTTTAGCTATGCGTTGAGTAGAGAAGATACTGAGAATGCCATACTCGGAGGACCTTAA 539
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 558 AGGTTTAGCTATGCGTTGAGTAGAGAAGATACCGAGAATGCCATACTTGGAGGACCTTAA 617
Query 540 AGAATATAAAGAGTTTGTT 558
|||||| ||||||||||||
Sbjct 618 AGAATAAAAAGAGTTTGTT 636
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26825034498
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5