BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949864
Length=1383
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51250.1 | Symbols: | Galactose oxidase/kelch repeat superf... 604 5e-172
AT2G03460.1 | Symbols: | Galactose oxidase/kelch repeat superf... 207 2e-52
AT5G52975.1 | Symbols: | Protein of unknown function (DUF1278)... 165 1e-39
AT4G39600.1 | Symbols: | Galactose oxidase/kelch repeat superf... 110 5e-23
> AT5G51250.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:20830743-20831849 FORWARD LENGTH=1107
Length=1107
Score = 604 bits (327), Expect = 5e-172
Identities = 895/1156 (77%), Gaps = 92/1156 (8%)
Strand=Plus/Plus
Query 248 TCACTTCCCGATGATTTGCTAATGAGCATCTTCGCACGTGTCTCAAGATTGTACTACCCG 307
||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||
Sbjct 7 TCACTTCCCGATGATTTGCTATTGAGCATCTTCGCACGCATCTCAAGATTGTACTATCCG 66
Query 308 ACTCTCTC-CTTAGTCTCCAAGAGCTTTCGATCTCTCCTAACTTCACCGGAGCTTTATAA 366
|||||||| ||| |||||||||||||| |||||||| ||| |||||||||| ||||| ||
Sbjct 67 ACTCTCTCTCTT-GTCTCCAAGAGCTTCCGATCTCTACTAGCTTCACCGGACCTTTACAA 125
Query 367 GGCTCGGTCACTCTCGGGCCAAAACGAGTGTTGTTGTCTCTACTTGTG-TTTACGGTTCA 425
|| || ||||||| |||| | || | | ||||||||||| |||| ||| | ||
Sbjct 126 AGCCCGATCACTCTTAGGCC-ACAC-TGAG-AGTTGTCTCTACGTGTGCTTT-CATTTTG 181
Query 426 AGCCTTATTCGAATTC-CAC-CTGGTTCACCCTCTGTCGGAAACCTGATC-AAACCCTAA 482
| || | || | ||| |||||||| ||||||||||||||||| | ||||||||
Sbjct 182 ATTCTGGCCCTAA--CACACATTGGTTCACTCTCTGTCGGAAACCTGA-CGGAACCCTAA 238
Query 483 CCAATGAGACCACT---AAGACCAAGTCAAGTGGTTATGTTTTGGCCAAAGTCCCAATTC 539
||||||| |||| | |||| ||||||| ||| ||||||||||| | || |||||||
Sbjct 239 CCAATGACACCAGTAAGAAGAAGAAGTCAAATGGGTATGTTTTGGCTACTGTGCCAATTC 298
Query 540 CTCC-TTCTCCTCGTGCACATTTTTCGAGTCTTGTCGCGGTTGGTTCTAATATCTACAAC 598
| || |||||||| |||| | ||||| ||||| || |||||||||||| |||||||||||
Sbjct 299 C-CCATTCTCCTCCTGCAAACTTTTCAAGTCTCGTGGCGGTTGGTTCTGATATCTACAAC 357
Query 599 CTTGGAGTTTCCAAAT-CCAT-CTACCAACCATCCTCTAGCGTCTCGATTCTGGATTGCC 656
|||| | |||| | || | ||| || || ||||| |||||||||||||||| ||
Sbjct 358 ATTGGTGGATCCATTTACC-TAGGACCCTCC-TCGTCTAGTGTCTCGATTCTGGATTCCC 415
Query 657 GGACTCACACGTGGCGCGAAGCTCCAAGCTTGCGGGTGGTGCCAATGTCACTTTCTGCTA 716
| |||||| ||||||||| ||||||||||||||||||| || ||||||| ||||||||
Sbjct 416 AGTCTCACATGTGGCGCGAGGCTCCAAGCTTGCGGGTGGAGCTGATGTCACATTCTGCTA 475
Query 717 GCGTACTTGAT-GAAAAGATATATGTAGCAGGAAGCTACAAAGATGACTATGGCGATTCC 775
|||| ||||| |||| ||||||||||||||||||||||||||||| | |||||||||||
Sbjct 476 GCGTCCTTGACAGAAA-GATATATGTAGCAGGAAGCTACAAAGATGGCAATGGCGATTCC 534
Query 776 GGTTCTTCGAAA-AACTTATTCGAGGTGTTTGACACTAAAACACAAGTTTGGGATCCTGA 834
|| | | || ||||| ||||||||||| ||||| ||||||||||| ||| |||||||
Sbjct 535 AACTCCT-GTAAGAACTTGTTCGAGGTGTTCGACACAAAAACACAAGTGTGGCATCCTGA 593
Query 835 TCCCATCCCTTGCAGCGAGACTACATGCAACTTTCTTAGCTGCAAAACCGCATGTATTGA 894
|||||||| |||||| |||| | | ||| ||| ||| || ||||| ||||||||||||
Sbjct 594 GCCCATCCCATGCAGCAAGACAAAAGGCAT-TTT-TTA-CTCCAAAAGCGCATGTATTGA 650
Query 895 TGGTAAGTT-CTATGTGGTGAGTGACGTGATTTACAGAGATG-TGTGTGCTTACGAATCC 952
||| ||||| | | |||| || ||| | | || ||| || ||| ||||||| ||
Sbjct 651 TGGAAAGTTTC-ACGTGG--AG--ACG--ACTCACGGAG-TGGTGTATGCTTAC-AA--- 698
Query 953 AAGGAAGGTAGATGGGACTTGGTTGGACTTG-GATCATATATGGAACATCATTTGTTTTT 1011
|||||||||||||||| || | || ||| | | ||| | | | | ||
Sbjct 699 --GGAAGGTAGATGGGACAAGGCTATACCAACGATG-T-T-TGGTA--TGAGG-GCTTC- 749
Query 1012 AGATTCTTGTTGTGATATAGACAACATTTGGTACTTTGTTTTTCAG-GGAAG-GTTTATA 1069
| |||||| ||| || ||| | || ||| || || | || || | ||| | ||| | |
Sbjct 750 ATATTCTTTTTGCGAGATAAATAATGTTTTGTTCTATATTCATC-GCGGA-GTGTTCAGA 807
Query 1070 TGGTATGATACTAAGGAAATACA-GTGGAGACAT-TTGAAGGGTTTGGTAGGACTACCTA 1127
||||||||||||||| || | | ||||||| || ||||| |||||| ||||||||||||
Sbjct 808 TGGTATGATACTAAGTTAAGA-ATGTGGAGA-ATATTGAAAGGTTTGTTAGGACTACCTA 865
Query 1128 AGTTC-CCTCCTAGT--GCTCGTATTAGATTGGCTAATTATAGTGGAAAGATAGCGGTTT 1184
||| ||| | | | | || | ||||||||| ||||| |||||||||| |||||||
Sbjct 866 -GTTTACCTGAGAATATGTTTGT-T-AGATTGGCTGATTATGGTGGAAAGATGGCGGTTT 922
Query 1185 TTTGGGACGATGTGTT-GCC-TTGTAATGG--C-GGCG--ATA-ATAAGAAGATGATTTG 1236
| ||||| || | | | ||| || | ||| | || | | | || ||| |||||||||
Sbjct 923 TATGGGAAGA-G-GATCGCCCTTCTTGTGGGGCTGGTGGCAGAGATGAGATGATGATTTG 980
Query 1237 GTGTGCAGAGATTGCGCTTGAAAAACGCA---AAAGTTATGAAATTTGGGGGAAAG-TTG 1292
|||||| | |||||||||| |||| ||| ||| || | | ||| |||||||| |||
Sbjct 981 GTGTGCCGTGATTGCGCTT-AAAAG-GCACCTAAATTT-T-AGTTTTTGGGGAAAGGTTG 1036
Query 1293 AGTGGTTTGATCATGTGCTTACAGTCCCTATAAC--CTGTGTTTTCGAGAAGGTTCTTGC 1350
|||||||||||||||||||||||||||||| ||| | |||||||| |||| |||| |
Sbjct 1037 AGTGGTTTGATCATGTGCTTACAGTCCCTA-AACAACA-TGTTTTCGTTAAGGCTCTTAC 1094
Query 1351 TGTTACTGTTTGATGA 1366
|| || ||||| |||
Sbjct 1095 TGCTA--GTTTG-TGA 1107
> AT2G03460.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr2:1043621-1044992 REVERSE LENGTH=1280
Length=1280
Score = 207 bits (112), Expect = 2e-52
Identities = 203/245 (83%), Gaps = 14/245 (6%)
Strand=Plus/Plus
Query 251 CTTCCCGATGATTTGCTAATGAGCATCTTCGCACGTGTCTCAAGATTGTACTACCCGACT 310
|||||||||||| ||||| |||||||||| ||||| ||||||||||||||||| ||||||
Sbjct 164 CTTCCCGATGATGTGCTAGTGAGCATCTTTGCACGCGTCTCAAGATTGTACTATCCGACT 223
Query 311 CTCTCCT-TAGTCTCCAAGAGCTTTCGATCTCTCCTAACTTCACCGGAGCTTTATAAGGC 369
|| | | ||||||||||||||| ||| |||| || ||||||| ||||| || ||||
Sbjct 224 CT-AAATCTCGTCTCCAAGAGCTTTAGATGTCTCTTAGCTTCACCAGAGCTATACAAGG- 281
Query 370 T-CGGTCACTCTCGGGCCAA-AACGAGTGTTGTTGTCTCTACT-TGTGTTTACGGTT-CA 425
| |||||||||| || ||| | ||| | ||||||| || | |||||| |||||| ||
Sbjct 282 TCCGGTCACTCTTAGG-CAACACCGA--G-AGTTGTCTTTA-TGTGTGTTCACGGTTCCA 336
Query 426 AG--CCTTATTCGAATTCCACCTGGTTCACCCTCTGTCGGAAACCTGATCAAACCCTAAC 483
|| | | || |||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 337 AGATCGTCATACGAACACTACCTGGTTCACCCTCTGTCGGAAACCTGATCAAACCCTAAC 396
Query 484 CAATG 488
|||||
Sbjct 397 CAATG 401
> AT5G52975.1 | Symbols: | Protein of unknown function (DUF1278)
| chr5:21481457-21482035 FORWARD LENGTH=579
Length=579
Score = 165 bits (89), Expect = 1e-39
Identities = 104/111 (94%), Gaps = 1/111 (1%)
Strand=Plus/Plus
Query 5 aaaGGATTAAC-AGGAAAGATGGGAAGCAAAACTATTCTCTCAGTCGTTTTGATTGTTTC 63
||||| ||||| | |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 39 AAAGGGTTAACAAAGAAAGATGGGAAGCAAAACTATTCTCTCAGTCATTTTGATTGTTTC 98
Query 64 CCTTTGTGCTGCCATTTTTGTCACTCAAGGAGTAGCTCAAACGCAAACACC 114
|||||||| |||||||||||||||||||||||||||||| | |||||||||
Sbjct 99 CCTTTGTGTTGCCATTTTTGTCACTCAAGGAGTAGCTCATATGCAAACACC 149
> AT4G39600.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:18389436-18390539 REVERSE LENGTH=1104
Length=1104
Score = 110 bits (59), Expect = 5e-23
Identities = 204/273 (75%), Gaps = 13/273 (5%)
Strand=Plus/Plus
Query 225 AGAAAAAGCCATCTCCAAATCCATCACTTCCCGATGATTTGCTAATGAGCAT-CTTCGCA 283
||||| ||| | || | ||||| |||||||| || |||||| || ||||| | ||| ||
Sbjct 24 AGAAATAGCGACCT-CGAATCCTTCACTTCCAGAAGATTTGGTAGTGAGC-TGCTTAGCT 81
Query 284 CGTGTCTCAAGATTGTACTACCCGACTCTCTCCTTAGTCTCCAAGAGCTTTCGATCTCTC 343
||||| || |||||||| |||||||||||||||||||||||||||||||| || || ||
Sbjct 82 CGTGTGTCGAGATTGTATTACCCGACTCTCTCCTTAGTCTCCAAGAGCTTCCGCTC-CTT 140
Query 344 C-TAACTTCACCGGAGCTTTATAAGGCTCGGTCACTCTCGGGCCAAAACGAGTGTTGTTG 402
| ||||||| || || || ||| |||| || || | || | | |||| |||||
Sbjct 141 GATTGCTTCACCAGATCTCTACAAGACTCGATCTCTGTTAGGTCGCACCGAGAGTTGTC- 199
Query 403 TCTCTACTTGTGTTTACGGTTCAAGCCTTATTCGAATTCCAC-CTGGTTCACCCTCTGTC 461
||| | || ||| ||||| | | ||| | || || | ||||||||| ||||| |
Sbjct 200 TCTAT-CT-GTGCTTACGATACTCTCCTGAAGATAAC-CCTCGCTGGTTCACTCTCTGCC 256
Query 462 GGAAACCTGATC-AA-A-CCCTAACCAATGAGA 491
| |||||| ||| || | |||||| ||| ||||
Sbjct 257 GAAAACCTAATCGAAGAACCCTAAGCAAGGAGA 289
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68122139565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5