BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949868
Length=1636
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53000.1 | Symbols: TAP46 | 2A phosphatase associated protei... 1026 0.0
AT5G53010.1 | Symbols: | calcium-transporting ATPase, putative... 241 2e-62
> AT5G53000.1 | Symbols: TAP46 | 2A phosphatase associated protein
of 46 kD | chr5:21485455-21487991 REVERSE LENGTH=1539
Length=1539
Score = 1026 bits (555), Expect = 0.0
Identities = 595/615 (97%), Gaps = 0/615 (0%)
Strand=Plus/Plus
Query 16 CTGTGATGGGTGGTCTAGCTATGGAGGAAATGCCTTTATCGGCGCTATTTGAGCAAGCAA 75
|||||||||||||| | ||||||||||||||||||||||||| |||||| |||||||| |
Sbjct 118 CTGTGATGGGTGGTTTGGCTATGGAGGAAATGCCTTTATCGGTGCTATTCGAGCAAGCTA 177
Query 76 GGAAAATTCATCTTGCTGCTTCAGAGTCCGGTGTTGATCAGGATGTTGTGAAGAAAGGAT 135
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 178 GGAAAATTCATCTTGCTGCTTCAGAGTCTGGTGTTGATCAGGATGTTGTGAAGAAAGGAT 237
Query 136 GTGAGATGTTTCAGAAGTGCGAAGATATGATCGGGAAGCTGGCGCTGTTTTCGTCTAACG 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 GTGAGATGTTTCAGAAGTGCGAAGATATGATCGGGAAGCTGGCGCTGTTTTCGTCTAACG 297
Query 196 AGACTAAAGAAGATATTAGCACCAACAATCTCAAATATCTTTTGGTGCCTTACTATCTTG 255
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 298 AGACTAAAGAAGATATTAGCACCAACAATCTCAAATATCTTTTGGTGCCTTATTATCTTG 357
Query 256 CGGACCTGACGGAGAAAATCATACAGGAAGACCGGATTCAAATTGTCAAAGCCTCGTATG 315
|||| |||| ||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 358 CGGAGTTGACAGAGAAAATCATACAGGAGGACCGGATTCAGATTGTCAAAGCCTCGTATG 417
Query 316 CAAAGTTGAAGGAGTTCTTTTCGTTCTGTGAGGCAATGGAGCTTGTTCCGGATGAGGAGT 375
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 CTAAGTTGAAGGAGTTCTTTTCGTTCTGTGAGGCAATGGAGCTTGTTCCGGATGAGGAGT 477
Query 376 TGGAGGCTTCTTCACGAGGAGGTTCCGGTGCACCTGCAGATCGAAAGGCTCTGAAGATAG 435
||||||||||||||||||||||||| ||||||||||| ||||||| |||||| |||||||
Sbjct 478 TGGAGGCTTCTTCACGAGGAGGTTCTGGTGCACCTGCTGATCGAAGGGCTCTCAAGATAG 537
Query 436 CTCGGTTCAAACGTCAAAAGGCTGCAGAGGCAAAGCTTCTTGAAATTAAAGAGAGGAAGG 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 CTCGGTTCAAACGTCAAAAGGCTGCAGAGGCAAAGCTTCTTGAAATTAAAGAGAGGAAGG 597
Query 496 AGCGACGTGGACGTTCCACTAAAGCAGCAGCCTTGTCGACTCCGGTTGAATCTGGAGAAG 555
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 598 AGCGACGTGGACGTTCCACTAAAGCATCAGCTTTGTCGACTCCGGTTGAATCTGGAGAAG 657
Query 556 ATGATATTCCAGATGATGACAGCGAAGAAGAGAGAGAGGCCTGGCTCTCCTCAATTAACT 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 ATGATATTCCAGATGATGACAGCGAAGAAGAGAGAGAGGCCTGGCTCTCCTCAATTAACT 717
Query 616 TGGCTGTTTGTAAGG 630
||||| |||||||||
Sbjct 718 TGGCTATTTGTAAGG 732
Score = 763 bits (413), Expect = 0.0
Identities = 473/502 (94%), Gaps = 3/502 (1%)
Strand=Plus/Plus
Query 1136 AACCTGGCACAGAGACGCTGCTGCGAGGGTACGGTACACTAACCCAGCACAACCAATCAC 1195
|||||||||||||||||||||||| ||| ||| |||| |||| || ||||||||||||||
Sbjct 860 AACCTGGCACAGAGACGCTGCTGCAAGGATACAGTACTCTAAACCGGCACAACCAATCAC 919
Query 1196 TTGTGCCACATTTGCACAAGATGTGTTAGAAGGAAGAGCTTCAGTATCAGAAGGTCACGA 1255
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 920 TTGTGCCACATTTGCACAAGATGTGTTAGAAGGAAGAGCTTCGGTATCACAAGGTCACGA 979
Query 1256 ACACAAGCACCAACCTCTTATATTCGGTCCAGCAAGCATCGTGGGTGGACCGCTCTCTAC 1315
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 980 ACACAAGAACCAACCTCTTATATTCGGTCCAGCAAGCATCGTGGGTGGACCGCTCTCTAC 1039
Query 1316 AC-AGAGAGAGAGGATGATAGCTCAGGTTTTCCAACCAAGTCACAGGATGCCTACAATGT 1374
| ||||||| || |||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1040 -CGAGAGAGAAAGAATGATAGCTCAGGTCTTCCAACCAAGTCACAGGATGCCAACAATGT 1098
Query 1375 GCATAGAGGATGCTGGATTAACAGAGATGAATATAATGAATGATTGGCAAGAGCAGACGA 1434
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1099 GCATAGAGGATGCTGGGTTAACAGAGATGAACATAATGAATGATTGGCAAGAGCAGACGA 1158
Query 1435 AAAAAGCCATTGAAGAAGCAACCACCTCATGGTACAGTGATAAACCTCTGAGAAGAAAGG 1494
|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
Sbjct 1159 AAAAAGCCATTGAAGAAGCAACCACCTCATGGTACAATGATAAACCTCTAAGAAGAAAAG 1218
Query 1495 AAGAGGACGAAGAAGATGATGATGAAGACGAGGAAGCTGTAATGAAAGCTAGAGCTTTCG 1554
|||| ||||| |||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1219 AAGAAGACGAGGAAGATGATGATGAAGACGAAGAAGCTGTGATGAAAGCTAGAGCTTTCG 1278
Query 1555 ATGATTGGAAGGATGATAATCCTCGTGGTGCAGGTAACAAGAAACTCACACCTTGTGGCT 1614
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1279 ATGATTGGAAGGATGATAATCCTCGCGGTGCAGGTAACAAGAAACTCACACCTTGTGGCT 1338
Query 1615 GAGAGATTGAGACTGAGACACA 1636
|||| | ||||| ||||||||
Sbjct 1339 GAGAC-TAGAGACCGAGACACA 1359
Score = 442 bits (239), Expect = 5e-123
Identities = 273/289 (94%), Gaps = 3/289 (1%)
Strand=Plus/Plus
Query 623 TTGTAAGGATGGAGAGGATGGGTTTTCTCGGGATGCTCTTGATGATCGTACAAAGAAAGC 682
||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 798 TTG-AAGGATGGAGAGGGTGGATTTTCTCGGGATGCTCTTGATGATCGTACAAAGAAAGC 856
Query 683 TGAAACCTGGCACAGAGACGCTGCTGCGAGGGTACGGTACTCTAACCCAGCACAACCAAT 742
||||||||||||||||||||||||||| ||| ||| ||||||||| || |||||||||||
Sbjct 857 TGAAACCTGGCACAGAGACGCTGCTGCAAGGATACAGTACTCTAAACCGGCACAACCAAT 916
Query 743 CACTTGTGCTACATTTGCACAAGATGTGTTAGAAGGAAGAGCTTCGGTATCAGAAGGTCA 802
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 917 CACTTGTGCCACATTTGCACAAGATGTGTTAGAAGGAAGAGCTTCGGTATCACAAGGTCA 976
Query 803 CGAACACAAGCACCAACCTCTTATATTCGGTCCAGCAAGCATCGTGGGTGGACCGCTCTC 862
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 977 CGAACACAAGAACCAACCTCTTATATTCGGTCCAGCAAGCATCGTGGGTGGACCGCTCTC 1036
Query 863 TACAC-AGAGAGAGAGGATGATAGCTCAGGTTTTCCAACCAAGTCACAG 910
||| | ||||||| || |||||||||||||| |||||||||||||||||
Sbjct 1037 TAC-CGAGAGAGAAAGAATGATAGCTCAGGTCTTCCAACCAAGTCACAG 1084
> AT5G53010.1 | Symbols: | calcium-transporting ATPase, putative
| chr5:21488490-21496537 REVERSE LENGTH=3458
Length=3458
Score = 241 bits (130), Expect = 2e-62
Identities = 155/167 (93%), Gaps = 2/167 (1%)
Strand=Plus/Plus
Query 961 GATACTTTAGTGGTTG-GACCAAAAAATCAGATGGAACTCCAATGTTTATTTATGGAATC 1019
||||||||||||| || ||||||||||||||||||||||||||||||||| || |||||
Sbjct 1304 GATACTTTAGTGG-TGTGACCAAAAAATCAGATGGAACTCCAATGTTTATCTACGGAATT 1362
Query 1020 ACTACTGCTGATGAAGCAACAGAATTTGTGATCACATCCCTGAGTTTTGGGATTGCTACA 1079
|| ||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 1363 ACCACTGCCGATGAAGCAATAGAATTTGTGATCACATCCCTGAGTTTTGGGATTGCGACA 1422
Query 1080 GTAGTAGTGGCAGTGCCTTTTGGACTTTCTATAGCCGTTCGCTTGAA 1126
||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1423 ATAGTAGTGGCAGTGCCTGTAGGACTTTCTATAGCCGTTCGCTTGAA 1469
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80822877450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5