BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949869
Length=3232
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53010.1 | Symbols: | calcium-transporting ATPase, putative... 2098 0.0
> AT5G53010.1 | Symbols: | calcium-transporting ATPase, putative
| chr5:21488490-21496537 REVERSE LENGTH=3458
Length=3458
Score = 2098 bits (1136), Expect = 0.0
Identities = 1393/1514 (92%), Gaps = 30/1514 (2%)
Strand=Plus/Plus
Query 1264 GATACTTTAGTGGTTG-GACCAAAAAATCAGATGGAACTCCAATGTTTATTTATGGAATC 1322
||||||||||||| || ||||||||||||||||||||||||||||||||| || |||||
Sbjct 1304 GATACTTTAGTGG-TGTGACCAAAAAATCAGATGGAACTCCAATGTTTATCTACGGAATT 1362
Query 1323 ACTACTGCTGATGAAGCAACAGAATTTGTGATCACATCCCTGAGTTTTGGGATTGCTACG 1382
|| ||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1363 ACCACTGCCGATGAAGCAATAGAATTTGTGATCACATCCCTGAGTTTTGGGATTGCGACA 1422
Query 1383 ATAGTAGTGGCAGTGCCTTTTGGACTTTCTATAGCCGTTCGCTTGAACTTTGCAAAGACA 1442
|||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||
Sbjct 1423 ATAGTAGTGGCAGTGCCTGTAGGACTTTCTATAGCCGTTCGCTTGAACTTTGCTAAGACA 1482
Query 1443 ACGAAGAAAATGATGACCGACAAACTTTTGATGTCTGTGGTTGATGTCTGGGCTGGAGGA 1502
||||||||||||| || |||||| |||||||||| ||||||||||||||||||||||||
Sbjct 1483 ACGAAGAAAATGAGGAAAGACAAAGTTTTGATGTCGGTGGTTGATGTCTGGGCTGGAGGA 1542
Query 1503 ATGAGAATGCAAGATATGGATAATGTTTCACAGTTGCCCCCGTTTCTTAAAGAACTAATC 1562
|| ||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||
Sbjct 1543 ATAAGAATGCAAGATATGGACGATGTCTCACAGTTGCCCACGTTTCTTAAAGAACTAATC 1602
Query 1563 ATAGAAGGCATTGCCCAAAACACAAATGGCAGTGTTGTTTTTGAAACGGGAGTCACTGAA 1622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1603 ATAGAAGGCATTGCCCAAAACACAAATGGCAGTGTTGTTTTTGAAACGGGAGTCACTGAA 1662
Query 1623 CCAGAGCTTTATGGATCACCAACAGAACAAGCTATTCTTAGCTTTGGGAATAAGTTGGGA 1682
|||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 1663 CCAGAGGTTTATGGATCACCAACAGAACAAGCCATTCTTAACTTTGGGAATAAGTTGGGA 1722
Query 1683 ATGAAATTCAATCATGCTAGGTCAGCATCATTAGTCCGTCATACTATACCATTCAGCCC- 1741
|||||||| || |||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1723 ATGAAATTTGATGATGCCAGGTCAGCATCATTAGTCCGTCATACTATACCATTCAACCCG 1782
Query 1742 AACAAAGAAATATGGAGGCGTGGCACTACAGATTGGTGCACACGCCCACGCTCATTGGAA 1801
|| |||||||||||||||||||||||||||| ||||| ||||||| |||| |||||||||
Sbjct 1783 AA-AAAGAAATATGGAGGCGTGGCACTACAGCTTGGTACACACGCTCACGTTCATTGGAA 1841
Query 1802 AGGATCTGCAAAAACTATTCTGAGTTCATGTGAAAGGTATATGGATGGGGCCAATAACCC 1861
|||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||| |
Sbjct 1842 AGGATCTGCAAAAACTATTCTGAGTTCATGCGAAGGGTATATGGATGGGGCCAACAACTC 1901
Query 1862 CAGAGGC-ATTGATGATGAGAAACGAAAGTTTTTTGAAGGAACAATTGAAGAGATGTGCA 1920
||||| | ||| |||| |||||||||||| ||||||||||||||| ||| | ||| | |
Sbjct 1902 CAGAG-CTATTAATGAACAGAAACGAAAGTCTTTTGAAGGAACAATAGAAAATATGAGTA 1960
Query 1921 ACAAAGGATTGCGTTGTGCAGCACTTGCTTATCAACCTTGTGAACTGGAAAGTCTTCCAA 1980
| | ||| |||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1961 AGGAGGGACTGCGTTGTGCAGCACTTGCTTATCAACCCTGTGAACTGGGAAGTCTTCCAA 2020
Query 1981 CAACCATTAAGGAACCTCGAAACCTTGTTTTGTTGGCTATTATTGGTATAAAGGATCCTT 2040
| | |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2021 C--C-ATTACGGAACCTCGAAACCTTGTTTTGTTGGCTATTGTTGGTATAAAGGATCCTT 2077
Query 2041 GCCGGCCAGGCACAAGGGATGCGATCCAACTGTGCAATTCCGGAAGTGTTAAGGTTTGCA 2100
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2078 GCCGGCCAGGAACAAGGGATGCGATCCAACTGTGCAATTCCGGAAGTGTTAAGGTTTGCA 2137
Query 2101 TGGTGATGGACTATGACGTTTTGACTGCACAAGCAATAGCAATTGAATGCGGGATACTGA 2160
|||||| |||| |||| | |||||||||||| ||||||||||||||||| |||||||| |
Sbjct 2138 TGGTGACGGACAATGATGGTTTGACTGCACAGGCAATAGCAATTGAATGTGGGATACTAA 2197
Query 2161 CAGATGCATCTGGCCGTAATATAAGGACAGGAGCCCAATTTCGTGAACTAACCGATCCAC 2220
| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 2198 CGGATGCATCTGGCCGTAATATAAGGACAGGAGCCCAATTTCGTGAACTTTCCGATCTAG 2257
Query 2221 AAAGAGAGCAGATCGCCGGAGACATCTTAGTTTTTGCTCAATCTTCTCCCGACGACAACC 2280
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2258 AAAGAGAGCAGATTGCCGGAGACATCTTAGTTTTTGCTCAATCTTCTCCCAACGACAACC 2317
Query 2281 TTCTGCTTGTCCAAGCACTGAAGAAAAGAGGGCATATAGTTGCAGCCACTGGGATGGGAA 2340
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 2318 TTCTGCTTGTCCAAGCACTGAAGAAAAGAGGCCATATAGTTGCAGCCACTGGAATGGGAA 2377
Query 2341 TACATGATCCAAAGACACTACGCGAGGCTCATGTTAGCCTTGCAATGGGAGTTGGAGGGA 2400
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2378 TACATGATCCAAAAACACTACGCGAGGCTGATGTTAGCCTTGCAATGGGAGTTGGAGGGA 2437
Query 2401 CCGCAGCAGCAAAAGAGAATTCCGATATCATTATACTAGATGATAATTTTGCTACGATTG 2460
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2438 CCGCAGCAGCAAAAGAGAATTCCGATTTCATTATACTAGATGATAATTTTGCTACGATTG 2497
Query 2461 TCAAGTGTATCATATGGTCTCGATCTCTATACACCAATGTCCAGAGATCTATCCTATTCC 2520
|||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||
Sbjct 2498 TCAAGTGTATCATATGGTCTCGATCTCTGTACAACAATGTCCAGAAATCTATCCTATTCC 2557
Query 2521 GGCTCACTGTCAGTGTATCAGCATTGGCTATCTGTGTGGTTGAGGTTGTAGTTTATGACG 2580
| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 2558 GCCTCACTGTCAGTGTATCAGCATTGGCTGTCTGTGTGGTTGAGGTTGTAGTTTATGATG 2617
Query 2581 CATTTCCACTTAACGTCGTGCAGTTTTGCTTTTCACTGATGCAGTTTCTGTGGCTTAATC 2640
||||||| ||||||| |||||||||| || | | | | | ||||||
Sbjct 2618 CATTTCCCCTTAACGCCGTGCAGTTT--CT-------G-T----T----G-G--TTAATC 2656
Query 2641 TTGTTATCGACATCTTAGGAGCATTAGCGTTGGCATACAGACCAAGTTCTGGTCACCACT 2700
| ||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||
Sbjct 2657 TAATTATCGACATCTTAGGAGCATTAGCTTTGGCATACAGACCAAGATCTGATCACCACC 2716
Query 2701 TAATGGGAAAGCCACCGGTTGGTATAAGAGATCCTCTTATAACCAAGGCGATGTGGTCCA 2760
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2717 TAATGGGAAAGCCACCGGTTGGTATAAGAGATCCTCTTATAACCAAGACGATGTGGTCCA 2776
Query 2761 AGTTGATAATACAG 2774
|| ||||||| |||
Sbjct 2777 AGATGATAATTCAG 2790
Score = 459 bits (248), Expect = 1e-127
Identities = 352/399 (88%), Gaps = 19/399 (5%)
Strand=Plus/Plus
Query 2833 TTCAGGTAATTTACCTAGTGCTGTCGCTGGTACCCAAAAATTCTGAGAAGCTACTGAAGC 2892
|||||||| ||||||||||||| |||||||||| || |||||||||||||||||||||||
Sbjct 2786 TTCAGGTATTTTACCTAGTGCTCTCGCTGGTACTCATAAATTCTGAGAAGCTACTGAAGC 2845
Query 2893 TGAAGCATGGTCATACCGGCAATGCGGAAAAAGTGATGAACACATTTG-TATTCAATTCC 2951
||||||||||||| || |||||||| |||||| ||||||||||| ||| |||||||||||
Sbjct 2846 TGAAGCATGGTCAGACGGGCAATGCCGAAAAAATGATGAACACA-TTGATATTCAATTCC 2904
Query 2952 TTAGTCTTCTGCCTGGTTTTTAATGAGTTTGAAATCCGAAGTGTAGACCAAACCTTCAAA 3011
|| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2905 TTTGTCTTCTACCTGGTTTTTAATGAGTTTGAAATCCAAAGTGTAGACCAAACCTTCAAA 2964
Query 3012 CAAATCCTTAGAGAGAATATGTTTCTCGTTACAATAACCTCAACTATCATCTCTCAGATA 3071
|| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2965 GAAGTCCTTAGAGAGAATATGTTTCTCGTTACAATAACCTCAACTATCATATCTCAGATA 3024
Query 3072 ATCGTAAT-AGAGTTGGCAGGCTTTTTAAGTTCTTCCACCAGGCTTGACTTGAAAAAATG 3130
||||| || | |||| |||||| | || ||| | ||||||||||||||||
Sbjct 3025 ATCGTGATCA-AGTTCGCAGGC-----A--TT-TTC-A------TTGACTTGAAAAAATG 3068
Query 3131 GGTGACGACAAGTCTTTTGGGATTGCTCAGCCAAGTCGCCAATCGCTACCCTTACCCGGT 3190
||||||||||||||||||||| || |||||||||||||||| ||||||||||||||| |
Sbjct 3069 GGTGACGACAAGTCTTTTGGGGTTACTCAGCCAAGTCGCCACTCGCTACCCTTACCCAGC 3128
Query 3191 CAACCAATATTACCGTAACTGAAATGTATCTTGCCATAT 3229
|| ||||||| | ||||||||| || | ||||||| |||
Sbjct 3129 CATCCAATATCATCGTAACTGAGATTTCTCTTGCCGTAT 3167
Score = 324 bits (175), Expect = 4e-87
Identities = 224/247 (91%), Gaps = 5/247 (2%)
Strand=Plus/Plus
Query 1026 GTTCAAAAAGATCTCCAAAGAAATCCGTTCCTGTTATCTGGCTCAAAACTGATAGATGGC 1085
|||||||||||||| |||| ||||||||| ||||||||||| |||||||||||||| |||
Sbjct 1018 GTTCAAAAAGATCTTCAAACAAATCCGTTTCTGTTATCTGGTTCAAAACTGATAGAAGGC 1077
Query 1086 ATAGGTACAATGCTGGTTACAAGTGTTGGAATGAACACTGCATGGGGGTTTAAGATGGAG 1145
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1078 ATAGGTACAATGCTGGTTACAAGTGTTGGAATGAACACTGAATGGGGGTTGAAGATGGAG 1137
Query 1146 ATTCCACAAGA-GACAGACGAAGAAAAGCCTTTTCAGGGATACCTGAAATGGCTTGCGAT 1204
|| |||| || ||| || |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1138 GTTTCACA-GAAGACTGATGAAGAAAAGCCTTTTCAGGGGTACCTGAAATGGCTTGCGAT 1196
Query 1205 TTCTGCCAGCTGGTCCT-TCGTTTTGTTCGCTTCAGTTGCCTGTAGTGTTCGATTAGGCC 1263
|||||||||||||| | |||||||||| |||||||||||||||||| ||| | |||||
Sbjct 1197 TTCTGCCAGCTGGTT-TGTCGTTTTGTTTGCTTCAGTTGCCTGTAGTATTCAAGTAGGCG 1255
Query 1264 GATACTT 1270
||| |||
Sbjct 1256 GAT-CTT 1261
Score = 292 bits (158), Expect = 1e-77
Identities = 328/405 (81%), Gaps = 31/405 (8%)
Strand=Plus/Plus
Query 354 GAACCTTCAACTTCTGGCGGATTTGGGATTGGATTGGACGAACTCGTTCAACTAGTCAAA 413
||| ||||||| || || || |||||||||||| |||| |||||||||||||||||||||
Sbjct 397 GAAGCTTCAACATCCGGAGGGTTTGGGATTGGAGTGGAAGAACTCGTTCAACTAGTCAAA 456
Query 414 GATGGTCGTAGCCTTGAAGCTTTGAATCGATATAATGGGGCAAGCACACTTGTTCATGGG 473
|| |||||||||||||||||||||||||||||||||| || ||||||
Sbjct 457 GAA---CGTAGCCTTGAAGCTTTGAATCGATATAATGGGG---------TT---CATGGG 501
Query 474 TTAACAACTCTGCTCAAGACTGATCTA-AAA-TCGGGCATAGATCCTTGTG-TGGATGAG 530
||| ||| | || | |||||||| || ||| | ||||||||||| | | | || |||||
Sbjct 502 TTATCAAATTTGTTGAAGACTGA-CTTGAAAGT-GGGCATAGATCGTCGCGATG-ATGAG 558
Query 531 ATAC-AGCATCGCAGGAACACTTTTGGGTCTAATACATACCCTTCCAGAAAGGGAAAGAG 589
|||| | | |||||||||| | | |||||| || || || |||| || |||||||||||
Sbjct 559 ATACTA-CTTCGCAGGAACGCATATGGGTCAAACACTTATCCTTGCAAAAAGGGAAAGAC 617
Query 590 ATTCTGGTGCTTTCTCTGGAGAGCTTGCAAGCTTTCTCATTTCCTGGTTATCTTCCTTGC 649
||||||| |||||||||||||||| || || |||||||||| ||||||||| | ||||
Sbjct 618 TTTCTGGTACTTTCTCTGGAGAGCTAGCCAGTTTTCTCATTTGCTGGTTATCATGTTTGC 677
Query 650 T-CAAGTAATTCTTT-CACTGCTGCGAGTTAACACAAAGGGTAT-CTTCGATGGATGGTA 706
| | ||| |||||| | ||||||||| |||| ||||||||||| ||| |||||||||||
Sbjct 678 TGCT-GTA-TTCTTTTCGCTGCTGCGAATTAAAACAAAGGGTATACTT-GATGGATGGTA 734
Query 707 TGTAGAAGCTTGCATCATTTTGGCCATTCTTCTTT-ACATCATTG 750
| |||||||||||||| |||||| || | || ||| |||||||||
Sbjct 735 TATAGAAGCTTGCATCGTTTTGGTCACTGTT-TTTCACATCATTG 778
Score = 159 bits (86), Expect = 1e-37
Identities = 130/151 (86%), Gaps = 4/151 (3%)
Strand=Plus/Plus
Query 879 GAGTACAAGCAGTCTCGTCAGTTTGA-AATCTTGAGAAAGGAGAAGAGAAACGTACACCT 937
||||||||||| ||| ||| |||| | || |||| |||||||||||| |||| | ||
Sbjct 793 GAGTACAAGCAATCTTGTCGGTTT-ATAAAGTTGACTGAGGAGAAGAGAACCGTATATCT 851
Query 938 AGAGGTTATTAGAAGTGGCAGAAGATTCTTGGTTTCTAAT-TATGATATTGTTGTGGGCG 996
||||||||| ||| ||||||||||| || ||||||| || |||||||||||||||||||
Sbjct 852 AGAGGTTATCAGAGGTGGCAGAAGAGTCAGGGTTTCT-ATATATGATATTGTTGTGGGCG 910
Query 997 ATATTGTACCCCTCAAGAACGGTGGTCAGGT 1027
||||||||||||||||||||||| |||||||
Sbjct 911 ATATTGTACCCCTCAAGAACGGTTGTCAGGT 941
Score = 93.5 bits (50), Expect = 1e-17
Identities = 76/88 (86%), Gaps = 3/88 (3%)
Strand=Plus/Plus
Query 21 ATGGTAGTATTTGAGTTGTCAATGTTCAGGTTTTGGAAGAGGCCATCCAATCCCAAAGGA 80
||||| |||||| | |||||||||||||||||||||||||||||||| | ||||| | |
Sbjct 1 ATGGTTGTATTTAATTTGTCAATGTTCAGGTTTTGGAAGAGGCCATC-A--CCCAATGTA 57
Query 81 GGTCCGGGAGATATAGAGGTTGGTCTCG 108
|| ||||||||| | ||| |||||||||
Sbjct 58 GGGCCGGGAGATCTTGAGATTGGTCTCG 85
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 160785052315
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5