BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949873
Length=679
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52980.1 | Symbols: | CONTAINS InterPro DOMAIN/s: ATPase, v... 941 0.0
> AT5G52980.1 | Symbols: | CONTAINS InterPro DOMAIN/s: ATPase,
vacuolar ER assembly factor, Vma12 (InterPro:IPR021013); Has
1807 Blast hits to 1807 proteins in 277 species: Archae -
0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses
- 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:21482160-21483722
REVERSE LENGTH=918
Length=918
Score = 941 bits (509), Expect = 0.0
Identities = 588/626 (94%), Gaps = 6/626 (1%)
Strand=Plus/Plus
Query 2 TGTTTGGACCCGATTAAAGATGGATCAACCCGACCCGAAAAATGGCGCTGGTCTGATTCT 61
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 62 TGTTTGGACCCGATCAAAGATGGATCAACCCGACCCGAAAAATGGCTCTGGTCTGATTCT 121
Query 62 CTCCGTCACTGAACCGATGCGGTCGTTTCTCGC-CATCGCGTCCGGTGATCTTCGTCTCT 120
||||| |||||||||| |||| ||||||||||| | |||| |||||||||| ||||||||
Sbjct 122 CTCCGCCACTGAACCGCTGCGATCGTTTCTCGCTC-TCGCCTCCGGTGATCGTCGTCTCT 180
Query 121 CCGAGGAACTCAGAGGAATTGCTTCCGATCTTAGCTCGAAGAACACCGTTTCC-TACAAA 179
|||| || |||||||||||||||||||||||| |||||||||||||| |||| ||||||
Sbjct 181 CCGACGAGCTCAGAGGAATTGCTTCCGATCTTCGCTCGAAGAACACC-ATTCCGTACAAA 239
Query 180 TTGCTCCGCGCTATATGGACCGGATCCGATCCGTTGACGAGACCCGG-TTTATTGGGACT 238
|||||||||||||||||||||||||||||||||| ||| ||| |||| ||| ||||||||
Sbjct 240 TTGCTCCGCGCTATATGGACCGGATCCGATCCGTCGACCAGA-CCGGATTTGTTGGGACT 298
Query 239 TTTCTCCGGCTCCGATTTCGTCTTCACCAGTCCCAAACCAAGAGAAAAGAGCGAAGAACT 298
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 299 TTTCTCCGGCTCCAATTTCGTCTTCACCAGTCCCAAACCCAGAGAAAAGAGCGAAGAACT 358
Query 299 GAAAATGAGATTACTGAAGCTGAAAGAAATAGCAGAGAGGAAGGAGTATGCTGAGCTTGT 358
|||| |||||||| ||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 359 GAAACTGAGATTAGTGAAGCTCAGAGAAATAGCAGAGAGGAAGGAGTATGCTGAGCTTGT 418
Query 359 TAAAGATATAACACCCAAGAAACAAGTCGAAGAGCCATTCTCCTCTTACAAAGACCAGCT 418
||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 419 TAAAGATATAACACCAAAGAAACAAGTCGAAGAGCCTTTCTCTTCTTACAAAGACCAGCT 478
Query 419 CGGTTTTGGTTTACACGTGGGTCTTACCATGTTCACTGGATATTTGGTTGGATACGCTTC 478
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CGGTTTTGGTTTACATGTTGGTCTTACCATGTTCACTGGATATTTGGTTGGATACGCTTC 538
Query 479 TTTCAGAGCTTTATTCAACCGCAACCCCGCTCTGAGTGCTGCTGGTGGGATTCTTGGACT 538
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CTTCAGAGCTTTATTCAACCGCAACCCCGCTCTGAGTGCTGCTGGTGGGATTCTTGGACT 598
Query 539 AGTTTTGGCGATGCTTGTGGAAACACTTCTGTTTATAATCAAAACGTCGAAAGATGATCA 598
|||| ||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||
Sbjct 599 AGTTCTGGCGATGCTTGTGGAAACGCTTCTATTTATAATCAAAACGTCTAAAGATGATCA 658
Query 599 GATCCAGAGCTCTAAATCGTTTACTC 624
||| ||||||||||||||||| ||||
Sbjct 659 GATTCAGAGCTCTAAATCGTTCACTC 684
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32853132138
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5