BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg949876 Length=2560 Score E Sequences producing significant alignments: (Bits) Value AT5G53010.1 | Symbols: | calcium-transporting ATPase, putative... 867 0.0 > AT5G53010.1 | Symbols: | calcium-transporting ATPase, putative | chr5:21488490-21496537 REVERSE LENGTH=3458 Length=3458 Score = 867 bits (469), Expect = 0.0 Identities = 852/1026 (83%), Gaps = 70/1026 (7%) Strand=Plus/Plus Query 854 GATGTCGGTGGTTGATGTCTGGGCTGGAGAAATAAGAATGCAAGATATGGATAATGGT-T 912 ||||||||||||||||||||||||||||| ||||||||||||||||||||| || || | Sbjct 1512 GATGTCGGTGGTTGATGTCTGGGCTGGAGGAATAAGAATGCAAGATATGGACGAT-GTCT 1570 Query 913 CACAGTTGCCCACCTTACTTAAAGAACTAATCATAGAAGGCATTGCCCAAAACACAAATG 972 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1571 CACAGTTGCCCACGTTTCTTAAAGAACTAATCATAGAAGGCATTGCCCAAAACACAAATG 1630 Query 973 GCAGTGTTGTTCTTGAAAC----G-----G-----GA-G--T-T---TCACCAACAGAAC 1011 ||||||||||| ||||||| | | || | | | ||||||||||||| Sbjct 1631 GCAGTGTTGTTTTTGAAACGGGAGTCACTGAACCAGAGGTTTATGGATCACCAACAGAAC 1690 Query 1012 AAGCCATTCTTAGCTTTGGGAATAAGTTGGGAATGAAATTTGACGATGTTAGGTCGGCAT 1071 |||||||||||| |||||||||||||||||||||||||||||| |||| ||||| |||| Sbjct 1691 AAGCCATTCTTAACTTTGGGAATAAGTTGGGAATGAAATTTGATGATGCCAGGTCAGCAT 1750 Query 1072 CATTAGGCCGTCATACTATACCATTCAACCCAGACAA-GAAATATGGAGGTGTGGCATTA 1130 |||||| |||||||||||||||||||||||| || || |||||||||||| |||||| || Sbjct 1751 CATTAGTCCGTCATACTATACCATTCAACCC-GAAAAAGAAATATGGAGGCGTGGCACTA 1809 Query 1131 AAGCTTAGTACACGA-GCCCTCGTTCATTGGAAAGGATCTGCAAAGATTATTCTGAATTC 1189 ||||| |||||| | || | |||||||||||||||||||||||| | |||||||| ||| Sbjct 1810 CAGCTTGGTACAC-ACGCTCACGTTCATTGGAAAGGATCTGCAAAAACTATTCTGAGTTC 1868 Query 1190 ATGCGAAAAGTATATGGATGGGTCCGACAACTCCAGAGCTATTGATGAACAGAAACGAAA 1249 ||||||| ||||||||||||| || ||||||||||||||||| |||||||||||||||| Sbjct 1869 ATGCGAAGGGTATATGGATGGGGCCAACAACTCCAGAGCTATTAATGAACAGAAACGAAA 1928 Query 1250 GGGTTTTGAAGAAACAATT-AAATACATGTGTGAGAGAGG-ATTGCGTTGTGCTGCACTT 1307 | |||||||| |||||| ||| | ||| || || |||| | |||||||||| |||||| Sbjct 1929 GTCTTTTGAAGGAACAATAGAAA-ATATGAGTAAG-GAGGGACTGCGTTGTGCAGCACTT 1986 Query 1308 GCTTATCAACCCTATGAACTGGAAAAACTTCCATCCAATGAGGCACTTTCTCGACTACCT 1367 ||||||||||||| |||||||| || |||||| ||| | | | || |||| Sbjct 1987 GCTTATCAACCCTGTGAACTGGGAAGTCTTCCAACCATT-ACG---------GA--ACCT 2034 Query 1368 AGTCTACCTGGAAAACTTGTTTTGTTGGCTATTATTGGTATAGAGGATCCTTGCCGGCCA 1427 | | ||| |||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 2035 ---C-----G-AAACCTTGTTTTGTTGGCTATTGTTGGTATAAAGGATCCTTGCCGGCCA 2085 Query 1428 GGCACAAAGGAAGAGATCCAACTGTGCCAAT-CCGGAGGTGTTAAGGTTCGCATGGTGAC 1486 || |||| ||| | ||||||||||||| ||| ||||| ||||||||||| |||||||||| Sbjct 2086 GGAACAAGGGATGCGATCCAACTGTGC-AATTCCGGAAGTGTTAAGGTTTGCATGGTGAC 2144 Query 1487 GGACGATGACATTTTGACTGCAACAG-CTATAGCAAA-GAAATGTGGGATATTTGACG-A 1543 |||| |||| |||||||||| ||| | ||||||| ||| ||||||||| | ||| | Sbjct 2145 GGACAATGATGGTTTGACTGCA-CAGGCAATAGCAATTGAA-TGTGGGATACTA-ACGGA 2201 Query 1544 GGCATCTGACGGTAATATATTGACAGGAGCTGAATTTCGT-AATCTTTCCGATCTAGAAA 1602 ||||||| | |||||||| ||||||||| |||||||| || |||||||||||||||| Sbjct 2202 TGCATCTGGCCGTAATATAAGGACAGGAGCCCAATTTCGTGAA-CTTTCCGATCTAGAAA 2260 Query 1603 GAGAGGAGCGCGTCGAAGATC-TCTTAGTTCTTGCTGAATCTTCTCCCAGCGAAAACCTT 1661 ||||| || | || ||| | |||||||| ||||| |||||||||||| ||| |||||| Sbjct 2261 GAGAGCAGATTGCCGGAGA-CATCTTAGTTTTTGCTCAATCTTCTCCCAACGACAACCTT 2319 Query 1662 CTGTTTGTCAAAGCACTGAAGAAAAGACAACATGTCGTTGCAGCCACTGGGATGGGAATA 1721 ||| ||||| ||||||||||||||||| ||| | |||||||||||||| ||||||||| Sbjct 2320 CTGCTTGTCCAAGCACTGAAGAAAAGAGGCCATATAGTTGCAGCCACTGGAATGGGAATA 2379 Query 1722 CATGATTCAGAGACACTAATG-GCGGCGGATGT-AGGCCTTGCAATGGGAATTGGAGGAA 1779 |||||| || | |||||| | | ||| ||||| || ||||||||||||| ||||||| | Sbjct 2380 CATGATCCAAAAACACTAC-GCGAGGCTGATGTTAG-CCTTGCAATGGGAGTTGGAGGGA 2437 Query 1780 CTGCAGCGGCAAAAGAGAAGTCCGATATCATAATATTGGATGGCGAATTT-GCTACGATC 1838 | ||||| ||||||||||| |||||| |||| ||| | |||| ||||| |||||||| Sbjct 2438 CCGCAGCAGCAAAAGAGAATTCCGATTTCATTATACTAGATGAT-AATTTTGCTACGATT 2496 Query 1839 ATCAAG 1844 ||||| Sbjct 2497 GTCAAG 2502 Score = 252 bits (136), Expect = 1e-65 Identities = 211/247 (85%), Gaps = 5/247 (2%) Strand=Plus/Plus Query 360 GTTCAAAAAGATCTTCAAATTGATCCATTCCTATTATCTGGTTCAAAACTGATAGAGGGC 419 ||||||||||||||||||| |||| || || ||||||||||||||||||||||| ||| Sbjct 1018 GTTCAAAAAGATCTTCAAACAAATCCGTTTCTGTTATCTGGTTCAAAACTGATAGAAGGC 1077 Query 420 ATTGGTACAATGCTGGTTACAAGTGTTGGAATGAATACTGAATGGGGGCAGATGATGGAG 479 || |||||||||||||||||||||||||||||||| |||||||||||| || ||||||| Sbjct 1078 ATAGGTACAATGCTGGTTACAAGTGTTGGAATGAACACTGAATGGGGGTTGAAGATGGAG 1137 Query 480 ATTGCACATGAT-ACTGATGAGGAAAAACCCTTTCAGGTATACTTGAAATGGATTGCAAA 538 || |||| || |||||||| ||||| || ||||||| ||| |||||||| |||| | Sbjct 1138 GTTTCACA-GAAGACTGATGAAGAAAAGCCTTTTCAGGGGTACCTGAAATGGCTTGCGAT 1196 Query 539 TTCTGCCAGCTGCTTAGTCGTTTTGTTTGCTTTAGTTGCCTGTA-TCGTTCAATTATGCC 597 |||||||||||| || |||||||||||||||| ||||||||||| | ||||| || || Sbjct 1197 TTCTGCCAGCTGGTTTGTCGTTTTGTTTGCTTCAGTTGCCTGTAGTA-TTCAAGTAGGCG 1255 Query 598 GATACTT 604 ||| ||| Sbjct 1256 GAT-CTT 1261 Score = 99.0 bits (53), Expect = 2e-19 Identities = 72/81 (89%), Gaps = 2/81 (2%) Strand=Plus/Plus Query 282 AGAGGTGG-AGGAAGCGTCTGGGTTTCTATTTATGATATTGTTGTGGGCGATATTGTACC 340 |||||||| | |||| ||| |||||||||| ||||||||||||||||||||||||||||| Sbjct 862 AGAGGTGGCA-GAAGAGTCAGGGTTTCTATATATGATATTGTTGTGGGCGATATTGTACC 920 Query 341 CCTGAGGAATGGTGGTCAGGT 361 ||| | ||| ||| ||||||| Sbjct 921 CCTCAAGAACGGTTGTCAGGT 941 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 127072866619 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5