BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949876
Length=2560
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53010.1 | Symbols: | calcium-transporting ATPase, putative... 867 0.0
> AT5G53010.1 | Symbols: | calcium-transporting ATPase, putative
| chr5:21488490-21496537 REVERSE LENGTH=3458
Length=3458
Score = 867 bits (469), Expect = 0.0
Identities = 852/1026 (83%), Gaps = 70/1026 (7%)
Strand=Plus/Plus
Query 854 GATGTCGGTGGTTGATGTCTGGGCTGGAGAAATAAGAATGCAAGATATGGATAATGGT-T 912
||||||||||||||||||||||||||||| ||||||||||||||||||||| || || |
Sbjct 1512 GATGTCGGTGGTTGATGTCTGGGCTGGAGGAATAAGAATGCAAGATATGGACGAT-GTCT 1570
Query 913 CACAGTTGCCCACCTTACTTAAAGAACTAATCATAGAAGGCATTGCCCAAAACACAAATG 972
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1571 CACAGTTGCCCACGTTTCTTAAAGAACTAATCATAGAAGGCATTGCCCAAAACACAAATG 1630
Query 973 GCAGTGTTGTTCTTGAAAC----G-----G-----GA-G--T-T---TCACCAACAGAAC 1011
||||||||||| ||||||| | | || | | | |||||||||||||
Sbjct 1631 GCAGTGTTGTTTTTGAAACGGGAGTCACTGAACCAGAGGTTTATGGATCACCAACAGAAC 1690
Query 1012 AAGCCATTCTTAGCTTTGGGAATAAGTTGGGAATGAAATTTGACGATGTTAGGTCGGCAT 1071
|||||||||||| |||||||||||||||||||||||||||||| |||| ||||| ||||
Sbjct 1691 AAGCCATTCTTAACTTTGGGAATAAGTTGGGAATGAAATTTGATGATGCCAGGTCAGCAT 1750
Query 1072 CATTAGGCCGTCATACTATACCATTCAACCCAGACAA-GAAATATGGAGGTGTGGCATTA 1130
|||||| |||||||||||||||||||||||| || || |||||||||||| |||||| ||
Sbjct 1751 CATTAGTCCGTCATACTATACCATTCAACCC-GAAAAAGAAATATGGAGGCGTGGCACTA 1809
Query 1131 AAGCTTAGTACACGA-GCCCTCGTTCATTGGAAAGGATCTGCAAAGATTATTCTGAATTC 1189
||||| |||||| | || | |||||||||||||||||||||||| | |||||||| |||
Sbjct 1810 CAGCTTGGTACAC-ACGCTCACGTTCATTGGAAAGGATCTGCAAAAACTATTCTGAGTTC 1868
Query 1190 ATGCGAAAAGTATATGGATGGGTCCGACAACTCCAGAGCTATTGATGAACAGAAACGAAA 1249
||||||| ||||||||||||| || ||||||||||||||||| ||||||||||||||||
Sbjct 1869 ATGCGAAGGGTATATGGATGGGGCCAACAACTCCAGAGCTATTAATGAACAGAAACGAAA 1928
Query 1250 GGGTTTTGAAGAAACAATT-AAATACATGTGTGAGAGAGG-ATTGCGTTGTGCTGCACTT 1307
| |||||||| |||||| ||| | ||| || || |||| | |||||||||| ||||||
Sbjct 1929 GTCTTTTGAAGGAACAATAGAAA-ATATGAGTAAG-GAGGGACTGCGTTGTGCAGCACTT 1986
Query 1308 GCTTATCAACCCTATGAACTGGAAAAACTTCCATCCAATGAGGCACTTTCTCGACTACCT 1367
||||||||||||| |||||||| || |||||| ||| | | | || ||||
Sbjct 1987 GCTTATCAACCCTGTGAACTGGGAAGTCTTCCAACCATT-ACG---------GA--ACCT 2034
Query 1368 AGTCTACCTGGAAAACTTGTTTTGTTGGCTATTATTGGTATAGAGGATCCTTGCCGGCCA 1427
| | ||| |||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 2035 ---C-----G-AAACCTTGTTTTGTTGGCTATTGTTGGTATAAAGGATCCTTGCCGGCCA 2085
Query 1428 GGCACAAAGGAAGAGATCCAACTGTGCCAAT-CCGGAGGTGTTAAGGTTCGCATGGTGAC 1486
|| |||| ||| | ||||||||||||| ||| ||||| ||||||||||| ||||||||||
Sbjct 2086 GGAACAAGGGATGCGATCCAACTGTGC-AATTCCGGAAGTGTTAAGGTTTGCATGGTGAC 2144
Query 1487 GGACGATGACATTTTGACTGCAACAG-CTATAGCAAA-GAAATGTGGGATATTTGACG-A 1543
|||| |||| |||||||||| ||| | ||||||| ||| ||||||||| | ||| |
Sbjct 2145 GGACAATGATGGTTTGACTGCA-CAGGCAATAGCAATTGAA-TGTGGGATACTA-ACGGA 2201
Query 1544 GGCATCTGACGGTAATATATTGACAGGAGCTGAATTTCGT-AATCTTTCCGATCTAGAAA 1602
||||||| | |||||||| ||||||||| |||||||| || ||||||||||||||||
Sbjct 2202 TGCATCTGGCCGTAATATAAGGACAGGAGCCCAATTTCGTGAA-CTTTCCGATCTAGAAA 2260
Query 1603 GAGAGGAGCGCGTCGAAGATC-TCTTAGTTCTTGCTGAATCTTCTCCCAGCGAAAACCTT 1661
||||| || | || ||| | |||||||| ||||| |||||||||||| ||| ||||||
Sbjct 2261 GAGAGCAGATTGCCGGAGA-CATCTTAGTTTTTGCTCAATCTTCTCCCAACGACAACCTT 2319
Query 1662 CTGTTTGTCAAAGCACTGAAGAAAAGACAACATGTCGTTGCAGCCACTGGGATGGGAATA 1721
||| ||||| ||||||||||||||||| ||| | |||||||||||||| |||||||||
Sbjct 2320 CTGCTTGTCCAAGCACTGAAGAAAAGAGGCCATATAGTTGCAGCCACTGGAATGGGAATA 2379
Query 1722 CATGATTCAGAGACACTAATG-GCGGCGGATGT-AGGCCTTGCAATGGGAATTGGAGGAA 1779
|||||| || | |||||| | | ||| ||||| || ||||||||||||| ||||||| |
Sbjct 2380 CATGATCCAAAAACACTAC-GCGAGGCTGATGTTAG-CCTTGCAATGGGAGTTGGAGGGA 2437
Query 1780 CTGCAGCGGCAAAAGAGAAGTCCGATATCATAATATTGGATGGCGAATTT-GCTACGATC 1838
| ||||| ||||||||||| |||||| |||| ||| | |||| ||||| ||||||||
Sbjct 2438 CCGCAGCAGCAAAAGAGAATTCCGATTTCATTATACTAGATGAT-AATTTTGCTACGATT 2496
Query 1839 ATCAAG 1844
|||||
Sbjct 2497 GTCAAG 2502
Score = 252 bits (136), Expect = 1e-65
Identities = 211/247 (85%), Gaps = 5/247 (2%)
Strand=Plus/Plus
Query 360 GTTCAAAAAGATCTTCAAATTGATCCATTCCTATTATCTGGTTCAAAACTGATAGAGGGC 419
||||||||||||||||||| |||| || || ||||||||||||||||||||||| |||
Sbjct 1018 GTTCAAAAAGATCTTCAAACAAATCCGTTTCTGTTATCTGGTTCAAAACTGATAGAAGGC 1077
Query 420 ATTGGTACAATGCTGGTTACAAGTGTTGGAATGAATACTGAATGGGGGCAGATGATGGAG 479
|| |||||||||||||||||||||||||||||||| |||||||||||| || |||||||
Sbjct 1078 ATAGGTACAATGCTGGTTACAAGTGTTGGAATGAACACTGAATGGGGGTTGAAGATGGAG 1137
Query 480 ATTGCACATGAT-ACTGATGAGGAAAAACCCTTTCAGGTATACTTGAAATGGATTGCAAA 538
|| |||| || |||||||| ||||| || ||||||| ||| |||||||| |||| |
Sbjct 1138 GTTTCACA-GAAGACTGATGAAGAAAAGCCTTTTCAGGGGTACCTGAAATGGCTTGCGAT 1196
Query 539 TTCTGCCAGCTGCTTAGTCGTTTTGTTTGCTTTAGTTGCCTGTA-TCGTTCAATTATGCC 597
|||||||||||| || |||||||||||||||| ||||||||||| | ||||| || ||
Sbjct 1197 TTCTGCCAGCTGGTTTGTCGTTTTGTTTGCTTCAGTTGCCTGTAGTA-TTCAAGTAGGCG 1255
Query 598 GATACTT 604
||| |||
Sbjct 1256 GAT-CTT 1261
Score = 99.0 bits (53), Expect = 2e-19
Identities = 72/81 (89%), Gaps = 2/81 (2%)
Strand=Plus/Plus
Query 282 AGAGGTGG-AGGAAGCGTCTGGGTTTCTATTTATGATATTGTTGTGGGCGATATTGTACC 340
|||||||| | |||| ||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 862 AGAGGTGGCA-GAAGAGTCAGGGTTTCTATATATGATATTGTTGTGGGCGATATTGTACC 920
Query 341 CCTGAGGAATGGTGGTCAGGT 361
||| | ||| ||| |||||||
Sbjct 921 CCTCAAGAACGGTTGTCAGGT 941
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 127072866619
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5