BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg949877 Length=2865 Score E Sequences producing significant alignments: (Bits) Value AT5G53010.1 | Symbols: | calcium-transporting ATPase, putative... 1402 0.0 > AT5G53010.1 | Symbols: | calcium-transporting ATPase, putative | chr5:21488490-21496537 REVERSE LENGTH=3458 Length=3458 Score = 1402 bits (759), Expect = 0.0 Identities = 1452/1772 (82%), Gaps = 105/1772 (6%) Strand=Plus/Plus Query 964 GATACTTTTA-TGGTCAGACCAAGAAAA-AAGATGGAAATCCGATGTTTATCCT-CGGAA 1020 ||||| |||| |||| |||||| |||| |||||||| ||| |||||||| || ||||| Sbjct 1304 GATAC-TTTAGTGGTGTGACCAA-AAAATCAGATGGAACTCCAATGTTTAT-CTACGGAA 1360 Query 1021 TTACCACTGCCAATGAAGCAACAGAATTTGTGCTCAAATCCCTGAGTTTTGGGATCGCGA 1080 ||||||||||| ||||||||| |||||||||| ||| |||||||||||||||||| |||| Sbjct 1361 TTACCACTGCCGATGAAGCAATAGAATTTGTGATCACATCCCTGAGTTTTGGGATTGCGA 1420 Query 1081 CAATAATAGTGGGAGTGGCTGTTGGACTTTCTATAGCCGTGCTCTTGAACCTTGC-AATT 1139 ||||| |||||| |||| |||| ||||||||||||||||| | ||||||| |||| || Sbjct 1421 CAATAGTAGTGGCAGTGCCTGTAGGACTTTCTATAGCCGTTCGCTTGAACTTTGCTAA-G 1479 Query 1140 ACAGCG-AGAAAAATGCTGACAGACAACGCTTTGATGTCGGTGGTTGATGTCCGGGCTGG 1198 ||| || || |||||| || |||||| | |||||||||||||||||||||| ||||||| Sbjct 1480 ACAACGAAG-AAAATGAGGAAAGACAAAGTTTTGATGTCGGTGGTTGATGTCTGGGCTGG 1538 Query 1199 AGAAATAAGAATGCAGGATATGGATGGTGGT-TCACAGTTGCCCACATTACTGAATGAAC 1257 || |||||||||||| |||||||| | | || |||||||||||||| || || || |||| Sbjct 1539 AGGAATAAGAATGCAAGATATGGACGAT-GTCTCACAGTTGCCCACGTTTCTTAAAGAAC 1597 Query 1258 TAATCATAGAAGGCATTGCCCAAAACACAAATGGCAGTGTTGTTCTTGAAACGGGAGTC- 1316 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1598 TAATCATAGAAGGCATTGCCCAAAACACAAATGGCAGTGTTGTTTTTGAAACGGGAGTCA 1657 Query 1317 -T---C-AG-GA---A-G-A---------GAACAAGCCATGCTTAGCTTCGCTGGGAATA 1356 | | || | | | | ||||||||||| |||| ||| |||||||| Sbjct 1658 CTGAACCAGAGGTTTATGGATCACCAACAGAACAAGCCATTCTTAACTT---TGGGAATA 1714 Query 1357 AGTTGGGAATGAAATTTGACGATGTTAGGTCGGCATCATTAGTCCGTCATACTATACCAT 1416 ||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||| Sbjct 1715 AGTTGGGAATGAAATTTGATGATGCCAGGTCAGCATCATTAGTCCGTCATACTATACCAT 1774 Query 1417 TCAACCCAGACAA-GAAATATGGAGGCGTGGCATTAGAGCTTAGTACACGA-GCCCACCT 1474 ||||||| || || ||||||||||||||||||| || ||||| |||||| | || ||| | Sbjct 1775 TCAACCC-GAAAAAGAAATATGGAGGCGTGGCACTACAGCTTGGTACAC-ACGCTCACGT 1832 Query 1475 TCATTGGAAAGGATCTGCAAATATTATTCTGAATTCATGCGAAAAGTATATAGATGGGTC 1534 ||||||||||||||||||||| | |||||||| |||||||||| |||||| |||||| | Sbjct 1833 TCATTGGAAAGGATCTGCAAAAACTATTCTGAGTTCATGCGAAGGGTATATGGATGGGGC 1892 Query 1535 CGACAACCCCATAGCTATTGATGAATTGAAACGAAAGGATTTTGAAGAAACAATTA-AAA 1593 | ||||| ||| ||||||| ||||| |||||||||| |||||||| |||||| | ||| Sbjct 1893 CAACAACTCCAGAGCTATTAATGAACAGAAACGAAAGTCTTTTGAAGGAACAAT-AGAAA 1951 Query 1594 ACATGTGTATGAGAGG-ATTGCGTTGTGCTGCACTTGCTTATCGACCCTATGAACTGGAA 1652 | ||| ||| | |||| | |||||||||| ||||||||||||| ||||| |||||||| | Sbjct 1952 ATATGAGTAAG-GAGGGACTGCGTTGTGCAGCACTTGCTTATCAACCCTGTGAACTGGGA 2010 Query 1653 AAG-CTTCCAACCATTGAGGAGCTTTCTACACTATCTAGTCTACCTGGAAACCTTGTTTT 1711 | | |||||||||||| | | | | || || | | |||||||||||| Sbjct 2011 A-GTCTTCCAACCATT-ACG-G------A-AC---CT---C-----G-AAACCTTGTTTT 2048 Query 1712 GTTGGCTATTATTGGTATAGAGGATCCTTGCCG-CCAAGGCACAAAGGAAGCAATCCAAC 1770 |||||||||| |||||||| ||||||||||||| ||| || |||| ||| || ||||||| Sbjct 2049 GTTGGCTATTGTTGGTATAAAGGATCCTTGCCGGCCA-GGAACAAGGGATGCGATCCAAC 2107 Query 1771 TGTGCAAATCCATA-GATGTTAAGGTTTGCATGGTGACGGATGATGACGTTTTGACTGCA 1829 ||||||| ||| | | |||||||||||||||||||||||| |||| | |||||||||| Sbjct 2108 TGTGCAATTCCGGAAG-TGTTAAGGTTTGCATGGTGACGGACAATGATGGTTTGACTGCA 2166 Query 1830 ACAG-CTATAGCAAAGGAATGTGGCATATTTGATG-AGGCATCTGACGGTAATATCACGA 1887 ||| | ||||||| |||||||| ||| | | | | ||||||| | ||||||| | || Sbjct 2167 -CAGGCAATAGCAATTGAATGTGGGATACTA-ACGGATGCATCTGGCCGTAATATAAGGA 2224 Query 1888 CAGGAGCTGAATTTCGT-AATCTTTCC-AGTCTAGAAAGA-ACGCAGCGCGCCGAATACC 1944 ||||||| |||||||| || |||||| | |||||||||| | |||| |||| | || Sbjct 2225 CAGGAGCCCAATTTCGTGAA-CTTTCCGA-TCTAGAAAGAGA-GCAGATTGCCGGAGACA 2281 Query 1945 TCTTAGTTCTTGCTCAATCTTCTCCCAGA-GACAACCTTCTGTTTGTCAAAGCACTGAAG 2003 |||||||| |||||||||||||||||| | |||||||||||| ||||| ||||||||||| Sbjct 2282 TCTTAGTTTTTGCTCAATCTTCTCCCA-ACGACAACCTTCTGCTTGTCCAAGCACTGAAG 2340 Query 2004 GAAAGAGGACACGTAGTTGCAGCCACTGGGATGGGAATACATGATTCAGAGACACTAATG 2063 ||||||| || |||||||||||||||| ||||||||||||||| || | |||||| | Sbjct 2341 AAAAGAGGCCATATAGTTGCAGCCACTGGAATGGGAATACATGATCCAAAAACACTAC-G 2399 Query 2064 -GCGGCGGATGTAAGCCTTGCAATGGGAATTCGAGGAACCGCAGCAGCAAAAGAAAAGTC 2122 | ||| ||||| ||||||||||||||| || |||| ||||||||||||||||| || || Sbjct 2400 CGAGGCTGATGTTAGCCTTGCAATGGGAGTTGGAGGGACCGCAGCAGCAAAAGAGAATTC 2459 Query 2123 AGATATT-ATTGTATTGGATGACAAATTTGCTACGATCGTCGAG-GTTAT-ACGATGGTG 2179 ||| || ||| || | ||||| || ||||||||||| ||| || || || | ||||| Sbjct 2460 CGAT-TTCATTATACTAGATGATAATTTTGCTACGATTGTCAAGTGT-ATCAT-ATGGTC 2516 Query 2180 TCGATATCTATACA-CAAATATCCAGAAG-CATGTCCTATTTCGGCTCACTGTCAGTGTA 2237 ||||| ||| |||| ||| | ||||||| | | ||||||| || ||||||||||||||| Sbjct 2517 TCGATCTCTGTACAACAA-TGTCCAGAAATC-TATCCTATTCCGCCTCACTGTCAGTGTA 2574 Query 2238 TCAGTCGTTG-CTATCTGTGTTGTTGAGGTTGTATTTTATGATGCATTTCCACTCAATAC 2296 |||| | ||| || ||||||| |||||||||||| |||||||||||||||| || || | Sbjct 2575 TCAG-CATTGGCTGTCTGTGTGGTTGAGGTTGTAGTTTATGATGCATTTCCCCTTAACGC 2633 Query 2297 CGTTCAGCTTCTGTTGCTTAATCTTATCATCGACATCTTTGGAGCATTATCGTTGGTATA 2356 ||| ||| |||||||| ||||||| || ||||||||||| ||||||||| | |||| ||| Sbjct 2634 CGTGCAGTTTCTGTTGGTTAATCTAATTATCGACATCTTAGGAGCATTAGCTTTGGCATA 2693 Query 2357 CAGACCACCAGCA-A--ACCATCTAATGGCAAAACCACCGGTTGGTATAAGAGACCCTCT 2413 ||||||| | | | |||| ||||||| ||| |||||||||||||||||||| ||||| Sbjct 2694 CAGACCAAGATCTGATCACCACCTAATGGGAAAGCCACCGGTTGGTATAAGAGATCCTCT 2753 Query 2414 TATAAATAAGACGATGTGGTCCAAGTTGGTGCTACAGGTGATTT-ACGTATTGCTGTTTC 2472 ||||| |||||||||||||||||| || | | ||||| |||| || || |||| | | Sbjct 2754 TATAACCAAGACGATGTGGTCCAAGATGATAATTCAGGT-ATTTTACCTAGTGCTCTCGC 2812 Query 2473 TGGCGGTCATAAATTCTGAGAAGATACTGAAGCTGATGCATGGTCATAATACCAGTAATG 2532 ||| ||||||||||||||||| |||||||||||| ||||||||| | | | |||| Sbjct 2813 TGGTACTCATAAATTCTGAGAAGCTACTGAAGCTGAAGCATGGTCAGA---CGGGCAATG 2869 Query 2533 CCGAAAAAGTGAAGAACACATTTATATTCAATTGCTTTATTTTCTGCCTGGCTTTTGGTG 2592 |||||||| ||| ||||||||| |||||||||| |||| | |||| ||||| |||| || Sbjct 2870 CCGAAAAAATGATGAACACATTGATATTCAATTCCTTTGTCTTCTACCTGGTTTTTAATG 2929 Query 2593 AGTTCGAAATTGGAAGTCTAGACCGAACCTTGAAAGAAATCCTTAGAGATAATATGTTTG 2652 |||| ||||| |||| |||||| |||||| |||||| |||||||||| ||||||||| Sbjct 2930 AGTTTGAAATCCAAAGTGTAGACCAAACCTTCAAAGAAGTCCTTAGAGAGAATATGTTTC 2989 Query 2653 TTATTACAATAGCCTCGACTATTGTATTTCAG 2684 | |||||||| |||| ||||| ||| |||| Sbjct 2990 TCGTTACAATAACCTCAACTATCATATCTCAG 3021 Score = 231 bits (125), Expect = 2e-59 Identities = 196/231 (85%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 726 GTTCAAAAAGATCTTCAAATGGATCCATTCCTATTATCTGGTTCGAAGCTGATAGAAGGC 785 ||||||||||||||||||| |||| || || ||||||||||| || |||||||||||| Sbjct 1018 GTTCAAAAAGATCTTCAAACAAATCCGTTTCTGTTATCTGGTTCAAAACTGATAGAAGGC 1077 Query 786 ATAGGTACAATGCTGGTTACAAGTGTTGGAAAGAATACCCAATGGGGGAAGATGATGGAG 845 ||||||||||||||||||||||||||||||| ||| || |||||||| || ||||||| Sbjct 1078 ATAGGTACAATGCTGGTTACAAGTGTTGGAATGAACACTGAATGGGGGTTGAAGATGGAG 1137 Query 846 ACTGCACATGA-GACTGATGAAGAAATGCCCTTTCAGGTATACTTGAAATGGATTACAAA 904 | |||| || |||||||||||||| ||| ||||||| ||| |||||||| || | | Sbjct 1138 GTTTCACA-GAAGACTGATGAAGAAAAGCCTTTTCAGGGGTACCTGAAATGGCTTGCGAT 1196 Query 905 TTCTGCCAGCTGCTTAGCCGTTTTGTTTGCTTTAGTTGCCTGTATTGTTCA 955 |||||||||||| || | |||||||||||||| ||||||||||| | |||| Sbjct 1197 TTCTGCCAGCTGGTTTGTCGTTTTGTTTGCTTCAGTTGCCTGTAGTATTCA 1247 Score = 104 bits (56), Expect = 5e-21 Identities = 73/81 (90%), Gaps = 2/81 (2%) Strand=Plus/Plus Query 648 AGAGGTGG-AGGAAGCGTCTGGGTTTCTGTTTATGATATTGTTGTGGGCGATATTGTACC 706 |||||||| | |||| ||| |||||||| | ||||||||||||||||||||||||||||| Sbjct 862 AGAGGTGGCA-GAAGAGTCAGGGTTTCTATATATGATATTGTTGTGGGCGATATTGTACC 920 Query 707 CCTCAAGAATGGTGGTCAGGT 727 ||||||||| ||| ||||||| Sbjct 921 CCTCAAGAACGGTTGTCAGGT 941 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 142373784234 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5