BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949877
Length=2865
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53010.1 | Symbols: | calcium-transporting ATPase, putative... 1402 0.0
> AT5G53010.1 | Symbols: | calcium-transporting ATPase, putative
| chr5:21488490-21496537 REVERSE LENGTH=3458
Length=3458
Score = 1402 bits (759), Expect = 0.0
Identities = 1452/1772 (82%), Gaps = 105/1772 (6%)
Strand=Plus/Plus
Query 964 GATACTTTTA-TGGTCAGACCAAGAAAA-AAGATGGAAATCCGATGTTTATCCT-CGGAA 1020
||||| |||| |||| |||||| |||| |||||||| ||| |||||||| || |||||
Sbjct 1304 GATAC-TTTAGTGGTGTGACCAA-AAAATCAGATGGAACTCCAATGTTTAT-CTACGGAA 1360
Query 1021 TTACCACTGCCAATGAAGCAACAGAATTTGTGCTCAAATCCCTGAGTTTTGGGATCGCGA 1080
||||||||||| ||||||||| |||||||||| ||| |||||||||||||||||| ||||
Sbjct 1361 TTACCACTGCCGATGAAGCAATAGAATTTGTGATCACATCCCTGAGTTTTGGGATTGCGA 1420
Query 1081 CAATAATAGTGGGAGTGGCTGTTGGACTTTCTATAGCCGTGCTCTTGAACCTTGC-AATT 1139
||||| |||||| |||| |||| ||||||||||||||||| | ||||||| |||| ||
Sbjct 1421 CAATAGTAGTGGCAGTGCCTGTAGGACTTTCTATAGCCGTTCGCTTGAACTTTGCTAA-G 1479
Query 1140 ACAGCG-AGAAAAATGCTGACAGACAACGCTTTGATGTCGGTGGTTGATGTCCGGGCTGG 1198
||| || || |||||| || |||||| | |||||||||||||||||||||| |||||||
Sbjct 1480 ACAACGAAG-AAAATGAGGAAAGACAAAGTTTTGATGTCGGTGGTTGATGTCTGGGCTGG 1538
Query 1199 AGAAATAAGAATGCAGGATATGGATGGTGGT-TCACAGTTGCCCACATTACTGAATGAAC 1257
|| |||||||||||| |||||||| | | || |||||||||||||| || || || ||||
Sbjct 1539 AGGAATAAGAATGCAAGATATGGACGAT-GTCTCACAGTTGCCCACGTTTCTTAAAGAAC 1597
Query 1258 TAATCATAGAAGGCATTGCCCAAAACACAAATGGCAGTGTTGTTCTTGAAACGGGAGTC- 1316
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1598 TAATCATAGAAGGCATTGCCCAAAACACAAATGGCAGTGTTGTTTTTGAAACGGGAGTCA 1657
Query 1317 -T---C-AG-GA---A-G-A---------GAACAAGCCATGCTTAGCTTCGCTGGGAATA 1356
| | || | | | | ||||||||||| |||| ||| ||||||||
Sbjct 1658 CTGAACCAGAGGTTTATGGATCACCAACAGAACAAGCCATTCTTAACTT---TGGGAATA 1714
Query 1357 AGTTGGGAATGAAATTTGACGATGTTAGGTCGGCATCATTAGTCCGTCATACTATACCAT 1416
||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||
Sbjct 1715 AGTTGGGAATGAAATTTGATGATGCCAGGTCAGCATCATTAGTCCGTCATACTATACCAT 1774
Query 1417 TCAACCCAGACAA-GAAATATGGAGGCGTGGCATTAGAGCTTAGTACACGA-GCCCACCT 1474
||||||| || || ||||||||||||||||||| || ||||| |||||| | || ||| |
Sbjct 1775 TCAACCC-GAAAAAGAAATATGGAGGCGTGGCACTACAGCTTGGTACAC-ACGCTCACGT 1832
Query 1475 TCATTGGAAAGGATCTGCAAATATTATTCTGAATTCATGCGAAAAGTATATAGATGGGTC 1534
||||||||||||||||||||| | |||||||| |||||||||| |||||| |||||| |
Sbjct 1833 TCATTGGAAAGGATCTGCAAAAACTATTCTGAGTTCATGCGAAGGGTATATGGATGGGGC 1892
Query 1535 CGACAACCCCATAGCTATTGATGAATTGAAACGAAAGGATTTTGAAGAAACAATTA-AAA 1593
| ||||| ||| ||||||| ||||| |||||||||| |||||||| |||||| | |||
Sbjct 1893 CAACAACTCCAGAGCTATTAATGAACAGAAACGAAAGTCTTTTGAAGGAACAAT-AGAAA 1951
Query 1594 ACATGTGTATGAGAGG-ATTGCGTTGTGCTGCACTTGCTTATCGACCCTATGAACTGGAA 1652
| ||| ||| | |||| | |||||||||| ||||||||||||| ||||| |||||||| |
Sbjct 1952 ATATGAGTAAG-GAGGGACTGCGTTGTGCAGCACTTGCTTATCAACCCTGTGAACTGGGA 2010
Query 1653 AAG-CTTCCAACCATTGAGGAGCTTTCTACACTATCTAGTCTACCTGGAAACCTTGTTTT 1711
| | |||||||||||| | | | | || || | | ||||||||||||
Sbjct 2011 A-GTCTTCCAACCATT-ACG-G------A-AC---CT---C-----G-AAACCTTGTTTT 2048
Query 1712 GTTGGCTATTATTGGTATAGAGGATCCTTGCCG-CCAAGGCACAAAGGAAGCAATCCAAC 1770
|||||||||| |||||||| ||||||||||||| ||| || |||| ||| || |||||||
Sbjct 2049 GTTGGCTATTGTTGGTATAAAGGATCCTTGCCGGCCA-GGAACAAGGGATGCGATCCAAC 2107
Query 1771 TGTGCAAATCCATA-GATGTTAAGGTTTGCATGGTGACGGATGATGACGTTTTGACTGCA 1829
||||||| ||| | | |||||||||||||||||||||||| |||| | ||||||||||
Sbjct 2108 TGTGCAATTCCGGAAG-TGTTAAGGTTTGCATGGTGACGGACAATGATGGTTTGACTGCA 2166
Query 1830 ACAG-CTATAGCAAAGGAATGTGGCATATTTGATG-AGGCATCTGACGGTAATATCACGA 1887
||| | ||||||| |||||||| ||| | | | | ||||||| | ||||||| | ||
Sbjct 2167 -CAGGCAATAGCAATTGAATGTGGGATACTA-ACGGATGCATCTGGCCGTAATATAAGGA 2224
Query 1888 CAGGAGCTGAATTTCGT-AATCTTTCC-AGTCTAGAAAGA-ACGCAGCGCGCCGAATACC 1944
||||||| |||||||| || |||||| | |||||||||| | |||| |||| | ||
Sbjct 2225 CAGGAGCCCAATTTCGTGAA-CTTTCCGA-TCTAGAAAGAGA-GCAGATTGCCGGAGACA 2281
Query 1945 TCTTAGTTCTTGCTCAATCTTCTCCCAGA-GACAACCTTCTGTTTGTCAAAGCACTGAAG 2003
|||||||| |||||||||||||||||| | |||||||||||| ||||| |||||||||||
Sbjct 2282 TCTTAGTTTTTGCTCAATCTTCTCCCA-ACGACAACCTTCTGCTTGTCCAAGCACTGAAG 2340
Query 2004 GAAAGAGGACACGTAGTTGCAGCCACTGGGATGGGAATACATGATTCAGAGACACTAATG 2063
||||||| || |||||||||||||||| ||||||||||||||| || | |||||| |
Sbjct 2341 AAAAGAGGCCATATAGTTGCAGCCACTGGAATGGGAATACATGATCCAAAAACACTAC-G 2399
Query 2064 -GCGGCGGATGTAAGCCTTGCAATGGGAATTCGAGGAACCGCAGCAGCAAAAGAAAAGTC 2122
| ||| ||||| ||||||||||||||| || |||| ||||||||||||||||| || ||
Sbjct 2400 CGAGGCTGATGTTAGCCTTGCAATGGGAGTTGGAGGGACCGCAGCAGCAAAAGAGAATTC 2459
Query 2123 AGATATT-ATTGTATTGGATGACAAATTTGCTACGATCGTCGAG-GTTAT-ACGATGGTG 2179
||| || ||| || | ||||| || ||||||||||| ||| || || || | |||||
Sbjct 2460 CGAT-TTCATTATACTAGATGATAATTTTGCTACGATTGTCAAGTGT-ATCAT-ATGGTC 2516
Query 2180 TCGATATCTATACA-CAAATATCCAGAAG-CATGTCCTATTTCGGCTCACTGTCAGTGTA 2237
||||| ||| |||| ||| | ||||||| | | ||||||| || |||||||||||||||
Sbjct 2517 TCGATCTCTGTACAACAA-TGTCCAGAAATC-TATCCTATTCCGCCTCACTGTCAGTGTA 2574
Query 2238 TCAGTCGTTG-CTATCTGTGTTGTTGAGGTTGTATTTTATGATGCATTTCCACTCAATAC 2296
|||| | ||| || ||||||| |||||||||||| |||||||||||||||| || || |
Sbjct 2575 TCAG-CATTGGCTGTCTGTGTGGTTGAGGTTGTAGTTTATGATGCATTTCCCCTTAACGC 2633
Query 2297 CGTTCAGCTTCTGTTGCTTAATCTTATCATCGACATCTTTGGAGCATTATCGTTGGTATA 2356
||| ||| |||||||| ||||||| || ||||||||||| ||||||||| | |||| |||
Sbjct 2634 CGTGCAGTTTCTGTTGGTTAATCTAATTATCGACATCTTAGGAGCATTAGCTTTGGCATA 2693
Query 2357 CAGACCACCAGCA-A--ACCATCTAATGGCAAAACCACCGGTTGGTATAAGAGACCCTCT 2413
||||||| | | | |||| ||||||| ||| |||||||||||||||||||| |||||
Sbjct 2694 CAGACCAAGATCTGATCACCACCTAATGGGAAAGCCACCGGTTGGTATAAGAGATCCTCT 2753
Query 2414 TATAAATAAGACGATGTGGTCCAAGTTGGTGCTACAGGTGATTT-ACGTATTGCTGTTTC 2472
||||| |||||||||||||||||| || | | ||||| |||| || || |||| | |
Sbjct 2754 TATAACCAAGACGATGTGGTCCAAGATGATAATTCAGGT-ATTTTACCTAGTGCTCTCGC 2812
Query 2473 TGGCGGTCATAAATTCTGAGAAGATACTGAAGCTGATGCATGGTCATAATACCAGTAATG 2532
||| ||||||||||||||||| |||||||||||| ||||||||| | | | ||||
Sbjct 2813 TGGTACTCATAAATTCTGAGAAGCTACTGAAGCTGAAGCATGGTCAGA---CGGGCAATG 2869
Query 2533 CCGAAAAAGTGAAGAACACATTTATATTCAATTGCTTTATTTTCTGCCTGGCTTTTGGTG 2592
|||||||| ||| ||||||||| |||||||||| |||| | |||| ||||| |||| ||
Sbjct 2870 CCGAAAAAATGATGAACACATTGATATTCAATTCCTTTGTCTTCTACCTGGTTTTTAATG 2929
Query 2593 AGTTCGAAATTGGAAGTCTAGACCGAACCTTGAAAGAAATCCTTAGAGATAATATGTTTG 2652
|||| ||||| |||| |||||| |||||| |||||| |||||||||| |||||||||
Sbjct 2930 AGTTTGAAATCCAAAGTGTAGACCAAACCTTCAAAGAAGTCCTTAGAGAGAATATGTTTC 2989
Query 2653 TTATTACAATAGCCTCGACTATTGTATTTCAG 2684
| |||||||| |||| ||||| ||| ||||
Sbjct 2990 TCGTTACAATAACCTCAACTATCATATCTCAG 3021
Score = 231 bits (125), Expect = 2e-59
Identities = 196/231 (85%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 726 GTTCAAAAAGATCTTCAAATGGATCCATTCCTATTATCTGGTTCGAAGCTGATAGAAGGC 785
||||||||||||||||||| |||| || || ||||||||||| || ||||||||||||
Sbjct 1018 GTTCAAAAAGATCTTCAAACAAATCCGTTTCTGTTATCTGGTTCAAAACTGATAGAAGGC 1077
Query 786 ATAGGTACAATGCTGGTTACAAGTGTTGGAAAGAATACCCAATGGGGGAAGATGATGGAG 845
||||||||||||||||||||||||||||||| ||| || |||||||| || |||||||
Sbjct 1078 ATAGGTACAATGCTGGTTACAAGTGTTGGAATGAACACTGAATGGGGGTTGAAGATGGAG 1137
Query 846 ACTGCACATGA-GACTGATGAAGAAATGCCCTTTCAGGTATACTTGAAATGGATTACAAA 904
| |||| || |||||||||||||| ||| ||||||| ||| |||||||| || | |
Sbjct 1138 GTTTCACA-GAAGACTGATGAAGAAAAGCCTTTTCAGGGGTACCTGAAATGGCTTGCGAT 1196
Query 905 TTCTGCCAGCTGCTTAGCCGTTTTGTTTGCTTTAGTTGCCTGTATTGTTCA 955
|||||||||||| || | |||||||||||||| ||||||||||| | ||||
Sbjct 1197 TTCTGCCAGCTGGTTTGTCGTTTTGTTTGCTTCAGTTGCCTGTAGTATTCA 1247
Score = 104 bits (56), Expect = 5e-21
Identities = 73/81 (90%), Gaps = 2/81 (2%)
Strand=Plus/Plus
Query 648 AGAGGTGG-AGGAAGCGTCTGGGTTTCTGTTTATGATATTGTTGTGGGCGATATTGTACC 706
|||||||| | |||| ||| |||||||| | |||||||||||||||||||||||||||||
Sbjct 862 AGAGGTGGCA-GAAGAGTCAGGGTTTCTATATATGATATTGTTGTGGGCGATATTGTACC 920
Query 707 CCTCAAGAATGGTGGTCAGGT 727
||||||||| ||| |||||||
Sbjct 921 CCTCAAGAACGGTTGTCAGGT 941
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 142373784234
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5