BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949878
Length=794
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52990.1 | Symbols: | SNARE-like superfamily protein | chr5... 1092 0.0
> AT5G52990.1 | Symbols: | SNARE-like superfamily protein | chr5:21483928-21485287
FORWARD LENGTH=1360
Length=1360
Score = 1092 bits (591), Expect = 0.0
Identities = 686/731 (94%), Gaps = 9/731 (1%)
Strand=Plus/Plus
Query 18 AAGGATGATTTCAAATCCAAGTTTATTGTCTTACACTTGCATTGCGAAAGGAACCGTAGT 77
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 257 AAGGATGATTTCAAATCCAAGTTTATTATCGTACACTTGCATTGCGAAAGGAACCGTAGT 316
Query 78 TCTCGCTGAGTTCGTTTCCAAGG-AAGAGCCAGGAATCGAAGCTGTAGCTTTACGATGTA 136
|||||| |||||||||| ||||| |||||||||||||||||||| ||||||||||||| |
Sbjct 317 TCTCGCGGAGTTCGTTT-CAAGGCAAGAGCCAGGAATCGAAGCTATAGCTTTACGATGCA 375
Query 137 TCGAGAACACGCCTCCACATCATTCAATGTTCTCTCATACAGTTCACAAGAAGACGTACA 196
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
Sbjct 376 TCGAGAACACGCCTCCTCATCATTCAATGTTTTCTCATACAGTTCACAAGAAGACGTATA 435
Query 197 CATTCGCAATCGATGATGATTCGTTTGTTTATTTCGCGATTT-TGGATGAAAGTATGGAG 255
||||||||||||| |||||||| |||||||||||| |||||| | |||||| ||||||
Sbjct 436 CATTCGCAATCGACGATGATTCCTTTGTTTATTTCTCGATTTCT-GATGAATCCATGGAG 494
Query 256 AAACCTGAATCATTCTGGGTTTTGAATCGTTTGAGATCAGCTATTGAAGATCTGATTAAT 315
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 AAACCTGAATCATTCTGGGTTTTGAATCGTTTGAGATCAGCTATTGAAGATCTGATTAAA 554
Query 316 GACGGTGGATCTGATGTTGAAACGTTGATTAATCCGGTTTCGCACTGTCTTCAATTGAAG 375
|||||||||||||||||||| ||| |||||||||| ||||| || |||||||||||||||
Sbjct 555 GACGGTGGATCTGATGTTGAGACGCTGATTAATCCTGTTTCTCATTGTCTTCAATTGAAG 614
Query 376 ATTGATCCAGTTTTCGCGGAGATTGTTGGTGTTGTTGATTTGGAATT---GGACATGGAT 432
|||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||
Sbjct 615 CTTGATCCAGTTTTCGCTGAGATTGTTGGTGTTGTTGATTTGGAATTATTGGATATGGAT 674
Query 433 TTGGTTGGATCACCAAGGAGCGTAGCGAGAGAGAGTCGGAATCCGAGTATTGACTCATCT 492
|||||||||||||| ||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 675 TTGGTTGGATCACCGAGGAGTGTAGCGAGAGAGAGTCGAAATCCGAGTATTGATTCATCT 734
Query 493 AAAGGAAGAAGAGCTGCTTTGATGCCACTTTTGGGGAAGCCATTGAAGGCGTTGAAGAAG 552
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 735 AAAGGAAGAAGAGCTGCTTTGATGCCACTTTTGGGGAAACCATTGAAGGCGTTGAAGAAG 794
Query 553 AAGAAGAGATTGCATAATGAAGCAAAAGGAGAAGATCCGTGTGAGGTTGGTTCGAT-CAA 611
||||||||||||||||||||||||||||| | |||| | ||||||||||||||||| ||
Sbjct 795 AAGAAGAGATTGCATAATGAAGCAAAAGGGGGAGATTCTTGTGAGGTTGGTTCGATTCA- 853
Query 612 GGAGATATCAGAGAAGAATGTTGATGTATGTGGGAATGGTAACAATGGAGTCTTACGCAA 671
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 854 GGAGATATCAGAGAAGAATGTTGATTTATGTGGGAATGGTAATAATGGAGTCTTACGCAA 913
Query 672 GGAACTGAGAAATGGTTTGTTAAGTGATCATCATCATAGACAAAAGGCGAAACAGATATG 731
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 914 GGAACTGAGAAATGGTTTGTTGAGTGATCATCATCATAGACAAAAGGCGAAACAGATTTG 973
Query 732 GAAGAAACATG 742
|||||||||||
Sbjct 974 GAAGAAACATG 984
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38630059043
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5