BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949879

Length=311
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G53000.1 | Symbols: TAP46 | 2A phosphatase associated protei...   154    5e-37


> AT5G53000.1 | Symbols: TAP46 | 2A phosphatase associated protein 
of 46 kD | chr5:21485455-21487991 REVERSE LENGTH=1539
Length=1539

 Score =  154 bits (83),  Expect = 5e-37
 Identities = 105/115 (91%), Gaps = 3/115 (3%)
 Strand=Plus/Plus

Query  160  TTGCAGGAGTTCTTTTCGTTCTGTGAGGCAATGGAACTTGTTCCAGATGAGGAGTTGGAG  219
            ||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct  423  TTGAAGGAGTTCTTTTCGTTCTGTGAGGCAATGGAGCTTGTTCCGGATGAGGAGTTGGAG  482

Query  220  GCTTCTTCACGA--AG-TTCTGGTGCACCTGCAGATCGAAGGGCTTTGAAGGTAG  271
            ||||||||||||  || ||||||||||||||| |||||||||||| | ||| |||
Sbjct  483  GCTTCTTCACGAGGAGGTTCTGGTGCACCTGCTGATCGAAGGGCTCTCAAGATAG  537



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14426843963


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5