BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949883

Length=331
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G53045.1 | Symbols:  | unknown protein; Has 122 Blast hits t...   507    3e-143


> AT5G53045.1 | Symbols:  | unknown protein; Has 122 Blast hits 
to 122 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa 
- 46; Fungi - 30; Plants - 41; Viruses - 0; Other Eukaryotes 
- 5 (source: NCBI BLink). | chr5:21508385-21509609 REVERSE 
LENGTH=580
Length=580

 Score =  507 bits (274),  Expect = 3e-143
 Identities = 313/332 (94%), Gaps = 1/332 (0%)
 Strand=Plus/Plus

Query  1    GAAGAAAGGAAGGAGCAAAAATGGCTGCGATTGTTCCTGCAACTACTCGTTCTGACCAAA  60
            |||| |||||||||||||| |||||||| | |||||||||||||||||||||||| ||||
Sbjct  52   GAAGGAAGGAAGGAGCAAATATGGCTGCCACTGTTCCTGCAACTACTCGTTCTGATCAAA  111

Query  61   CTTGGGATTTTAGTTGTAATTTGGATGTGAATTTTGAATCGGAAGAACATGCTTTGATTG  120
            | |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct  112  CATGGGATTTTAGTTGTAATTTGGATGTGAGTTTTGAATCAGAAGAACATGCTTTGATTG  171

Query  121  CTTACACATCTTTGGCTGTTGATAAAGAGTTGCAGCCTGATAAGGTGAGAAGAGTTATGT  180
            |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  172  CTTATACATCATTGGCTGTTGATAAAGAGTTGCAGCCTGATAAGGTGAGAAGAGTTATGT  231

Query  181  CAGTATCAAACAACAAGCTTTCTGTGCATTTTGAAGCAATAGAGGCAAGGCTTCTTCGCG  240
            |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct  232  CAGTATCAAACAACAAGCTTTCTGTGCACTTTGAAGCAATAGAGGCAAGGCTGCTTCGCG  291

Query  241  CTTCGTTCTCTGCGTTTGTAGACGTACTTACGCTAGCCACAAGAACAATTCAAGAATTTG  300
            ||||||||||||| ||||||||||| ||||| || |||||||||||||||||||||||||
Sbjct  292  CTTCGTTCTCTGCATTTGTAGACGTTCTTACACTGGCCACAAGAACAATTCAAGAATTTG  351

Query  301  GGCAAAAGTAAAACACCAATGTGAAGA-AAAA  331
            | |||||||||||||||||| |||||| ||||
Sbjct  352  GTCAAAAGTAAAACACCAATATGAAGAGAAAA  383



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15432198943


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5