BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949887
Length=706
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53070.1 | Symbols: | Ribosomal protein L9/RNase H1 | chr5:... 1127 0.0
> AT5G53070.1 | Symbols: | Ribosomal protein L9/RNase H1 | chr5:21518593-21520421
FORWARD LENGTH=1061
Length=1061
Score = 1127 bits (610), Expect = 0.0
Identities = 676/708 (95%), Gaps = 4/708 (1%)
Strand=Plus/Plus
Query 1 AATATCGTTGAATCGAGAAAATGGCTTATGTTGGGCAAAGTAGAAACGTGATTCGGCATG 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 AATATTGTTGAATCGAGAAAATGGCTTATGTTGGGCAAAGTAGAAACGTGATTCGGCATG 181
Query 61 TAGT-TACGAGAGGAACAGCTTATCACAAGTCTGAAAATGCGATTCATCATCCTCTCCTT 119
|||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 182 TAGTCT-CGAGAGGAACAGCTTATCACAAGTATGAAAATGCGATTCATCATCCTCTCCTT 240
Query 120 TTCGCTTGTCAAGGAGTTAGATACAGGAAATTGGAAGTTATTCTTACAACGGGTATAGAG 179
|||||||||||||||||| ||||||| ||||| |||||||||||||||||||| || |||
Sbjct 241 TTCGCTTGTCAAGGAGTTCGATACAGAAAATTAGAAGTTATTCTTACAACGGGCATTGAG 300
Query 180 AAGCTTGGCAAAGCCGGTGAGACGGTGAAGGTAGCTCCTGGATACTTCAGGAATCATCTT 239
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 301 AAGCTTGGCAAAGCTGGTGAGACTGTGAAGGTAGCTCCTGGATACTTCAGGAATCACCTT 360
Query 240 ATGCCGAAACTTCTTGCTGTGCCTAACATTGACAAGTATGCTTATCTCATCCGAGAGCAA 299
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATGCCAAAACTTCTTGCTGTGCCTAACATTGACAAGTATGCTTATCTCATCCGAGAGCAA 420
Query 300 CGCAAGATGTATAATCATGAAGAGGAAAAAGAGGAGGTTAAGGTGGTTCATAAAACTTCT 359
||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||
Sbjct 421 CGCAAGATGTATAATCATGAAGAAGTAAAGGAGGAGGTTAAGGTGGTTCATAAAACTTCT 480
Query 360 GAAGTCCAGACAAAGGAGTATGAAAAGGCCGCAAAGCGCCTGGCGAATGCTAATTTGGTA 419
|||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 481 GAAGTCCAGACAAAAGAGTATGAAAAGGCTGCAAAGCGTCTGGCGAATGCTAATTTGGTA 540
Query 420 TTGAGGAAGTTAGTTGATAAGGAAAAGTTCAAAAACCGCTCCTCAAAAGACGATAAACCT 479
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 541 TTGAGGAAGTTAGTTGACAAGGAAAAGTTCAAAAACCGCTCCTCAAAAGACGACAAACCT 600
Query 480 GATGTACAAACTCCTATCACAAAAGAAGAGATAGTCTCTGAGGTGGCGAGGCAGCTCTGT 539
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 601 GATGTTCAAACTCCTATCACAAAGGAAGAGATAGTCTCTGAGGTGGCGAGGCAGCTCTGT 660
Query 540 GTGAAGATTGATCCAGACAACGTAGTTTTACCGGCGCCTTTGGAAACTTTTGGCGAATAC 599
|||||||||||||||||||| || |||||| ||||||||||||||||||||||||| |||
Sbjct 661 GTGAAGATTGATCCAGACAATGTGGTTTTAGCGGCGCCTTTGGAAACTTTTGGCGAGTAC 720
Query 600 GAGGTGCCTCTGAAATTCCCCAAGACAATTCCTTTGCCACAAGGAACTGTTCAATGGATT 659
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GAGGTGCCTCTTAAATTCCCCAAGACAATTCCTTTGCCACAAGGAACTGTTCAATGGATT 780
Query 660 CTCAAAGTCAAAGTCCGTGGCCATTAAAATCT-CCACATTTGGAAGTC 706
|||||||||||||||||||||||||||| ||| |||| |||| |||||
Sbjct 781 CTCAAAGTCAAAGTCCGTGGCCATTAAA-TCTTCCACCTTTGAAAGTC 827
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34209454107
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5