BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949894
Length=542
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53110.1 | Symbols: | RING/U-box superfamily protein | chr5... 634 0.0
> AT5G53110.1 | Symbols: | RING/U-box superfamily protein | chr5:21529022-21533159
FORWARD LENGTH=1300
Length=1300
Score = 634 bits (343), Expect = 0.0
Identities = 404/433 (93%), Gaps = 6/433 (1%)
Strand=Plus/Plus
Query 76 GCTATTCCTAGAAGAGCTCGTTACGCAATAGCCATAGCCGCCGGAATCCCAGGAGCTTTG 135
|||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 715 GCTATTCCGAGAAGAGCTCGTTACGCAATAGCCGTAGGCGCCGGAATCCCAGGAGCTTTA 774
Query 136 ATCGTCTTTGGTCTTTTCTGTTTCATTTACAGCAAAATCAGTTCATGCATTAAACGACGC 195
|| ||||||||||||||||| ||| | ||||||||||||||||||||||||||||| ||
Sbjct 775 ATAGTCTTTGGTCTTTTCTGCTTCGTATACAGCAAAATCAGTTCATGCATTAAACGGCGT 834
Query 196 CGTCTCGTCCCAAGTCCAGAGATCAACAACGCTCAAGCCCATTATTTACATTCTAGTGTC 255
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 835 CGTCTCGTCCCAACCCCAGAGATCAACAACGCTCAAGCCCATTATTTACATTCAAGTGTC 894
Query 256 A-ACGTAATGGGCCTTGATGGGCCAACTATAGAGTCATACCCCAAA-ATAGTATTGGGAG 313
| | |||||||| ||||||||||||||||||||||| || |||||| |||||||||||||
Sbjct 895 ATA-GTAATGGGTCTTGATGGGCCAACTATAGAGTCGTA-CCCAAAGATAGTATTGGGAG 952
Query 314 AGAGCAAAAGGTTGCCCAAAGTAGATGATGCTACGTGTGCTATTTGTCTATCGGAGTATG 373
|||||||||||||||||||||| ||||| ||||| |||||||||||||| || |||||||
Sbjct 953 AGAGCAAAAGGTTGCCCAAAGTTGATGACGCTACATGTGCTATTTGTCTCTCCGAGTATG 1012
Query 374 AGCCAAAGGAGACGCTTCGGACAATTCCAAC-GTGTCAACATTGTTTTCATGCTGATTGT 432
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1013 AGCCAAAGGAGACGCTTCGGACAATTCC-ACAGTGTCAACATTGTTTTCATGCTGATTGT 1071
Query 433 ATCGACGAGTGGCTGAAATTGAATGGGACTTGTCCGGTGTGTCGGAACTCTCCGGAGCAG 492
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1072 ATCGACGAGTGGCTGAAGTTGAATGGGACTTGTCCGGTGTGTCGGAACTCACCGGAGCAG 1131
Query 493 ATTTTTCCGCCTG 505
||||| |||||||
Sbjct 1132 ATTTTGCCGCCTG 1144
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25971053999
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5