BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949896
Length=2192
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53130.1 | Symbols: CNGC1, ATCNGC1 | cyclic nucleotide gated... 3430 0.0
AT2G23980.1 | Symbols: ATCNGC6, CNGC6 | cyclic nucleotide-gated... 231 2e-59
> AT5G53130.1 | Symbols: CNGC1, ATCNGC1 | cyclic nucleotide gated
channel 1 | chr5:21537721-21541029 REVERSE LENGTH=2653
Length=2653
Score = 3430 bits (1857), Expect = 0.0
Identities = 2076/2183 (95%), Gaps = 9/2183 (0%)
Strand=Plus/Plus
Query 1 AATCTTATTAGTCTCAAAACTATGAATTTCCGACAAGAGAAGTTTGTAAGGTTTCAAGAT 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 374 AATCTTATTAGTCTC-AAACTATGAATTTCCGACAAGAGAAGTTTGTAAGGTTTCAAGAT 432
Query 61 TGGAAGTCCGACAAGACTTCCTCCGACGTGGAATATTCCGGGAGAAATGAGATTCAGACT 120
|||||||| || ||||||||||||||||||||||||||||| | ||| |||||||| |||
Sbjct 433 TGGAAGTCGGATAAGACTTCCTCCGACGTGGAATATTCCGGTAAAAACGAGATTCAAACT 492
Query 121 GGAATATTCCGGAGAACAATAAGCTCAATCTCAGACAAGTTTTACAGAAGCTTTGAATCA 180
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 493 GGAATATTCCAGAGAACAATAAGCTCAATCTCCGACAAGTTTTACAGAAGCTTTGAATCA 552
Query 181 AGCTCTGCAAGGATCAAAGTTTTCAAAAGATCTTACAAGTCTTACTCTTTTAAAGAAGCT 240
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 553 AGCTCTGCAAGGATCAAACTATTCAAAAGATCTTACAAGTCTTACTCTTTTAAAGAAGCT 612
Query 241 GTTTCAAAAGGGATTGGTTCAACTCACAAAATACTTGACCCACAAGGACCTTTTCTTCAA 300
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 613 GTTTCAAAAGGGATTGGTTCTACTCACAAAATTCTTGACCCACAAGGACCTTTTCTTCAG 672
Query 301 AGATGGAACAAGATCTTTGTTTTAGCTTGTATCATCGCTGTTTCGCTTGACCCTTTGTTC 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 673 AGATGGAACAAGATCTTTGTTTTAGCTTGTATCATCGCTGTCTCGCTTGACCCTTTGTTC 732
Query 361 TTCTACGTGCCTATCATTGATGATACCAAGAAATGTCTTGGTATTGACAAGAAAATGGAG 420
||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||
Sbjct 733 TTCTACGTGCCTATCATCGATGATGCTAAGAAATGTCTTGGTATTGACAAGAAAATGGAA 792
Query 421 ATAACTGCAAGCGTTTTGCGCTCTTTCACTGATGTTTTTTACATTATTCACATCATTTTC 480
||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 793 ATAACAGCAAGCGTTTTGCGCTCTTTCACTGATGTTTTTTATGTCCTTCACATCATTTTC 852
Query 481 CAGTTTCGTACTGGCTTTATCGCTCCTTCGTCTCGAGTTTTTGGGAGAGGTGTTCTTGTC 540
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 853 CAGTTCCGTACTGGCTTTATCGCTCCTTCGTCTCGTGTTTTTGGGAGAGGTGTTCTTGTT 912
Query 541 GAGGACAAGCGAGAGATTGCAAAACGTTACTTGTCCTCACATTTCATAATTGACATTCTT 600
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 913 GAGGACAAGCGAGAGATCGCTAAACGTTACTTGTCCTCACATTTCATAATTGACATTCTT 972
Query 601 GCTGTTCTTCCGCTTCCACAGATGGTGATTTTGATTGTCATTCCACATATGAGAGGGTCA 660
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||
Sbjct 973 GCTGTTCTTCCGCTTCCGCAGATGGTGATTTTGATAATCATTCCACATATGAGAGGTTCA 1032
Query 661 TTGTCTTTGAACACGAAGAATATGTTGAAGTTCATTGTTTTCTTCCAATATATACCGAGG 720
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1033 TCGTCTTTGAACACGAAGAATATGTTGAAGTTTATTGTTTTCTTCCAATATATACCGAGG 1092
Query 721 TTTATAAGAATCTATCCGCTCTACAAGGAAGTGACAAGAACTTCAGGCATACTCACTGAG 780
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1093 TTTATAAGAATATATCCGCTCTACAAGGAAGTTACAAGAACTTCAGGCATACTCACTGAG 1152
Query 781 ACAGCTTGGGCTGGAGCTGCTTTCAATCTCTTCCTCTACATGCTTGCTAGTCATGTGTTT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1153 ACAGCTTGGGCTGGAGCTGCTTTCAATCTCTTCCTCTACATGCTTGCTAGTCATGTGTTT 1212
Query 841 GGTGCTTTCTGGTATTTGTTCTCAATCGAACGCGAAACAGTATGTTGGAAACAAGCTTGC 900
|||||||||||||||||||||||||||||||||||||| || || ||||||||||||||
Sbjct 1213 GGTGCTTTCTGGTATTTGTTCTCAATCGAACGCGAAACGGTGTGCTGGAAACAAGCTTGT 1272
Query 901 GAGAAGACA-AAC--TCAAGCTGCATTCCGA-GCTTGTTGTACTGTGACCGTCAAATTCC 956
|||| || | ||| || | |||||| ||| | |||||||||||||||| | ||| | |
Sbjct 1273 GAGAGGA-ATAACCCTCC-G-TGCATTTCGAAG-TTGTTGTACTGTGACCCTGAAACTGC 1328
Query 957 AGGAGGCAATGCTTTCCTCAATGAGTCTTGTCCGATTCAGACACCAAACACAACACTTTT 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1329 AGGAGGCAATGCTTTCCTCAATGAGTCTTGTCCGATTCAGACACCAAACACAACACTCTT 1388
Query 1017 CGACTTTGGGATATTCCTTAACGCACTTCAGTCCGGTGTAGTGGAATCTCAAGATTTCCC 1076
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 1389 CGACTTTGGGATATTCCTTGACGCACTTCAATCCGGTGTAGTGGAATCTCAAGATTTCCC 1448
Query 1077 TCAGAAGTTCTTTTACTGTTTCTGGTGGGGTCTGCAAAACCTCAGTTCGCTCGGTCAGAA 1136
||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1449 TCAAAAGTTTTTTTACTGTTTCTGGTGGGGTCTGCAGAACCTCAGTTCGCTCGGTCAGAA 1508
Query 1137 CCTTGAAACAAGTACATATGTTTGGGAGATCTGTTTTGCGGTCTTCATTTCTATTGCCGG 1196
|||| |||||||||||||| ||||||| |||||||| ||||| |||||||||||||| ||
Sbjct 1509 CCTTAAAACAAGTACATATATTTGGGAAATCTGTTTCGCGGTGTTCATTTCTATTGCGGG 1568
Query 1197 GCTGGTTTTGTTCTCGTTCTTGATTGGGAACATGCAGACGTATCTGCAATCGACGACCAC 1256
||||||||||||||| ||||||||||| || |||||||||||||||||||| || |||||
Sbjct 1569 GCTGGTTTTGTTCTCCTTCTTGATTGGAAATATGCAGACGTATCTGCAATCCACTACCAC 1628
Query 1257 AAGGTTGGAGGAGATGAGAGTAAAGAGAAGAGACGCAGAACAATGGATGTCTCACCGTTT 1316
|| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1629 GAGATTGGAGGAGATGAGGGTAAAGAGAAGAGACGCAGAACAATGGATGTCACACCGTTT 1688
Query 1317 GCTCCCTGAGAACTTGAGAAAAAGAATCCGGCGGTACGAGCAGTACAAATGGCAAGAGAC 1376
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1689 GCTACCTGAGAACTTGAGAAAAAGAATCCGGCGATACGAGCAGTACAAATGGCAAGAGAC 1748
Query 1377 AAGAGGCGTTGACGAAGAGAATCTTCTGAGTAATCTTCCCAAAGATCTTAGACGCGACAT 1436
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1749 AAGAGGTGTTGACGAAGAGAATCTTCTTAGTAATCTTCCCAAAGATCTTAGACGCGACAT 1808
Query 1437 CAAACGTCATCTCTGTCTCGCCCTTCTCATGCGGGTCCCGATGTTTGAGAAGATGGACGA 1496
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1809 CAAACGTCATCTCTGTCTCGCCCTTCTCATGCGGGTCCCCATGTTTGAGAAAATGGACGA 1868
Query 1497 ACAGCTTCTTGATGCTCTCTGTGACCGTTTGCAACCTGTGTTATACACAGAGGAAAGCTA 1556
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1869 ACAGCTTCTTGATGCGCTCTGTGACCGTTTGCAACCTGTGTTATACACAGAGGAAAGCTA 1928
Query 1557 CATAGTAAGAGAAGGAGATCCGGTAGACGAAATGCTCTTTATTATGCGTGGGAAGCTTCT 1616
||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 1929 CATAGTAAGAGAAGGAGATCCGGTAGACGAAATGCTCTTCATAATGCGCGGGAAGCTTCT 1988
Query 1617 AACAATCACAACAAATGGTGGAAGAACCGGTTTTTTCAATTCCGAGTATCTTGGAGCCGG 1676
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1989 AACAATCACAACAAACGGTGGAAGAACCGGTTTTTTAAATTCCGAGTATCTTGGAGCCGG 2048
Query 1677 TGATTTCTGCGGTGAGGAGCTTTTAACCTGGGCTTTAGACCCACACACATCCTCAAACCT 1736
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2049 TGATTTCTGTGGTGAGGAGCTTTTAACCTGGGCTTTAGACCCACACTCATCCTCAAACCT 2108
Query 1737 CCCAATCTCAACAAGAACTGTTCGAGCTCTCATGGAAGTCGAAGCTTTCGCACTTAAAGC 1796
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2109 CCCAATCTCAACAAGAACTGTTCGAGCTCTCATGGAAGTTGAAGCTTTCGCACTTAAAGC 2168
Query 1797 TGATGACCTCAAATTTGTGGCATCCCAGTTCAGACGTCTTCACAGCAAACAGCTAAGACA 1856
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2169 TGATGACCTCAAATTCGTGGCTTCCCAGTTCAGACGTCTTCACAGCAAACAGCTAAGACA 2228
Query 1857 TACTTTCAGGTTCTACTCGCAACAATGGAGGACTTGGGCCGCTTGCTTCATACAAGCCGC 1916
||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 2229 TACTTTCAGGTACTACTCACAACAATGGAAGACTTGGGCCGCTTGCTTCATACAAGCCGC 2288
Query 1917 TTGGAGAAGATACATTAAGAAGAAACTTGAAGAATCTCTTAAAGAAGAAGAGAACCGGTT 1976
||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 2289 TTGGAGAAGATACATTAAGAAGAAACTCGAAGAGTCTCTTAAAGAAGAAGAGAATCGGTT 2348
Query 1977 GCAGGACGCTTTGGCTAAGGAAGCTTGTGGAAGTTCCCCAAGCCTCGGGGCTACAATATA 2036
|||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 2349 GCAGGATGCTTTGGCTAAAGAAGCTTGTGGAAGTTCCCCAAGCCTCGGTGCTACAATATA 2408
Query 2037 CGCATCACGGTTTGCTGCAAATATCTTGCGCACAATACATAGGAGCGGATCAGTAAGGAA 2096
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2409 CGCATCACGGTTTGCTGCAAATATCTTGCGCACAATACGTAGGAGCGGATCAGTAAGGAA 2468
Query 2097 ACCGAGGATGCCAGAACGAATGCCACCTATGCTACTTCAGAAACCAGCAGAACCAGATTT 2156
||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2469 ACCAAGGATGCCGGAACGAATGCCACCTATGCTACTTCAGAAACCAGCAGAGCCAGATTT 2528
Query 2157 CAACAGTGATGATTAATTAATTA 2179
|||||||||||||||||||||||
Sbjct 2529 CAACAGTGATGATTAATTAATTA 2551
> AT2G23980.1 | Symbols: ATCNGC6, CNGC6 | cyclic nucleotide-gated
channel 6 | chr2:10201104-10204467 REVERSE LENGTH=2516
Length=2516
Score = 231 bits (125), Expect = 2e-59
Identities = 554/753 (74%), Gaps = 62/753 (8%)
Strand=Plus/Plus
Query 1219 ATTGGGAACATGCAGACGTATCTGCAATCGAC-GACCACAAGGTTGGAGGAGATGAGAGT 1277
||||| ||||||||||| ||||| |||||| | |||| |||| || || ||| ||||
Sbjct 1382 ATTGGAAACATGCAGACTTATCTTCAATCG-CTTACCATTCGGTTAGAAGAAATGCGAGT 1440
Query 1278 AAAGAGAAGAGACGCAGAACAATGGATGTC-TCACCGTTTGC-TCC-CTGAGAACTTGAG 1334
||| ||| | ||| ||||||| |||||| | ||| || ||| ||| | ||||| || |
Sbjct 1441 AAAAAGACGTGACTCAGAACAGTGGATG-CATCATCGAATGCTTCCAC-CAGAAC-TGCG 1497
Query 1335 AAAAAGAATCCGGCGGTACGAGCAGTACAAATGGCAAGAGACAAGAGGCGTTGACGAAGA 1394
|| | | | || || || |||||||| ||| ||||| | || ||||| |||||
Sbjct 1498 GGAACGGGTTAGACGATATGACCAGTACAAGTGGTTGGAGACGCGTGGAGTTGATGAAGA 1557
Query 1395 GAATCTT-CTGAGTAATCTTCCCAAA-GATCTTAGACGCGACATCAAACGTCATCTCTGT 1452
||||||| | || |||| ||||||| ||||||||| | || ||||||||||||||||||
Sbjct 1558 GAATCTTGTTCAG-AATC-TCCCAAAGGATCTTAGAAGAGATATCAAACGTCATCTCTGT 1615
Query 1453 CTCGCCCTT-CTCATG-CGGGTCCCGA-TGTTTGAGAAGATGGACGAACA-GCTTCTT-G 1507
|||| | || || | | || || | |||||||||| ||||| | | | || | || |
Sbjct 1616 CTCG-CGTTAGTC-CGAAGAGTTCC-ATTGTTTGAGAATATGGATG-AGAGGC-TGTTAG 1670
Query 1508 ATGCTCTCTGTGA-CCGTTTGCAA-CCTGTGT-TATACACAGAGGAAAG-C-TACATAGT 1562
|||| ||||||| | || || || ||| | | ||| || | ||| | ||| | ||
Sbjct 1671 ATGCAATCTGTGAGAGGCTT--AAGCC-ATGTCTGTTCACTGA-G-AAGTCGTACTTGGT 1725
Query 1563 AAGAGAAGGAGATCCGGT-AGACGAAATGCTCTTTATTATGCGTGGGAAGCTTC-TAACA 1620
| || |||||||| || | |||| |||||||| ||||| ||||| | || || ||
Sbjct 1726 TCGTGAGGGAGATCCAGTCA-ACGAGATGCTCTTCATTATCCGTGGTAGGC-TCGAAAGT 1783
Query 1621 ATCACAACAAATGGTGGAAGAACCGGTTTTTTCAATTCC-GAGTAT-CTTGGAGCCGGTG 1678
| || || |||| || |||| ||| || | ||| || |||| | ||| || || |
Sbjct 1784 GTAACCACTGATGGCGGTAGAAGCGGATTCTACAA--CCGGAGTTTACTTAAAGAAGGAG 1841
Query 1679 ATTTCTGCGGTGAGGAGCTTTTAACCTGGGC-TTTAGACCCACACACATCC---TCAAAC 1734
||||||||||||| |||||||| || ||||| || || || || | |||| || |||
Sbjct 1842 ATTTCTGCGGTGACGAGCTTTTGACATGGGCGCTT-GATCC-CA-A-ATCCGGTTCTAAC 1897
Query 1735 CTCCCAAT-CTCAACAAGAACTGTTCG-A-G-CTCTCATGGAAGTCGAAGCTTTCGCACT 1790
||||| | ||| |||||||| | | | | | || | | ||||| ||||||||||| ||
Sbjct 1898 CTCCC-TTCCTCTACAAGAACCG-T-GAAGGCCT-TAACCGAAGTGGAAGCTTTCGCTCT 1953
Query 1791 TAAAGCTGATGACCTCAAATTTGTGGCATCCCAGTTCA-GACGTCTTCACAGCAAAC-AG 1848
| ||| ||||| || ||||| |||||| |||||||| || | || || |||| || ||
Sbjct 1954 GATAGCCGATGAGCTGAAATTCGTGGCAAGCCAGTTCAGGA-GACTCCATAGCAGACAAG 2012
Query 1849 CTA-AGACATACTTTCAGGTTCTACTCGCAACAATGGAGGACTTGGGCCGCTTGCTTCAT 1907
|| | ||| || ||||| ||||| || || |||||||||||||||||||||||||||||
Sbjct 2013 -TACA-ACACACGTTCAGATTCTATTCACAGCAATGGAGGACTTGGGCCGCTTGCTTCAT 2070
Query 1908 ACAAGCCGCTTGGAGAAGATACATTAAGAAGAA 1940
||||| || ||| || | ||||| |||| |||
Sbjct 2071 GCAAGCAGCATGGCGACGGTACATAAAGAGGAA 2103
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108734380470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5