BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949897
Length=1303
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53140.1 | Symbols: | Protein phosphatase 2C family protein... 2060 0.0
> AT5G53140.1 | Symbols: | Protein phosphatase 2C family protein
| chr5:21548473-21552470 FORWARD LENGTH=1971
Length=1971
Score = 2060 bits (1115), Expect = 0.0
Identities = 1241/1303 (95%), Gaps = 4/1303 (0%)
Strand=Plus/Plus
Query 3 TAAGATTTGGCTACTTAGATGGTATGCAGCAGTTTCATAAGGAGTTTCATTGTTCAAGCT 62
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 TAAGGTTTGACTACTTAGATGGTATGCAGCAGTTTCATAAGGAGTTTCATTGTTCAAGCT 412
Query 63 GGTGGTCATATTGGGGTGTTGGCTCAAGGACGACATCAGTTTAACCATATTAAGAAGACT 122
||| ||| |||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 413 GGTTGTCGTATTGGGGTGTTGGCTCAAGGAAGACATCAGTTTATTCATATTAAGAAGACT 472
Query 123 TTCACTGTTGGTTTTCGATTTAGAACTAGTGTGATTGGATTTAGAAGAACCTGTGGACTT 182
|| | ||| |||||| |||||||||||||||||||||||||||||| |||| ||||| ||
Sbjct 473 TTGAGTGTGGGTTTTGGATTTAGAACTAGTGTGATTGGATTTAGAACAACCAGTGGAATT 532
Query 183 GGATTTAGAACTAGTGCGAAGATGATGGTTGATACTTCTACCGGAGAGAAACGTATATCC 242
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 533 GGATTTAGAACTAGTGCGAAGATGATGGTTGATACTTCTGCTGGAGAGAAACGTATATCC 592
Query 243 TTTGTTGATATGCCTCCTGAGAAAGTTGATGATGGTGGATACATCGGTGGTGGTTGGAAA 302
|| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 593 TTAGTTGATATGCCGCCTGAGAAAGTTGATGATGGTGGATACATCGGTGGTGGGTGGAAA 652
Query 303 AATGACGATGGAAGCTTGAGCTGTGGGTACTGTAGTTTCAGAGGGAAAAGATCTACTATG 362
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 653 AATGATGATGGAAGCTTGAGCTGTGGGTACTGTAGTTTCAGAGGGAAAAGATCTACGATG 712
Query 363 GAAGATTTCTATGATGTCAAAGCTTCCACAATTGAAGGCCAAACAGTTTGCATGTTTGGA 422
||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 713 GAAGATTTCTATGATATCAAAGCTTCCACTATTGAAGGCCAAGCAGTTTGCATGTTTGGA 772
Query 423 ATATTTGATGGTCATGGTGGTTCACGTGCTGCTGAGTACTTGAAGGAACACCTCTTTAAC 482
||||||||||| ||||||||||||||||||||||| ||| ||||||||||||| ||||||
Sbjct 773 ATATTTGATGGCCATGGTGGTTCACGTGCTGCTGAATACCTGAAGGAACACCTGTTTAAC 832
Query 483 AATCTTATGAAGCATCCACAATTTTTGACAGACACCAAGCTGGCATTAAATGAAACATAT 542
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 AATCTCATGAAGCATCCACAATTTTTGACAGACACCAAGCTGGCATTAAATGAAACATAT 892
Query 543 AAACAAACTGATGTAGCATTCCTCGAGTCAGAAAAGGATACTTACAGAGATGATGGCTCC 602
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 893 AAACAAACTGATGTAGCATTCCTCGAGTCCGAAAAGGATACTTACAGAGATGATGGCTCC 952
Query 603 ACAGCATCGGCTGCTGTGTTGGTGGGGAACCATTTGTATGTTGCAAATGTTGGAGACTCG 662
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 ACAGCATCTGCTGCTGTGTTGGTGGGGAACCATTTGTATGTTGCAAATGTTGGAGACTCG 1012
Query 663 AGGACAATAGTTTCTAAAGCTGGGAAAGCGATCGCGCTATCTGATGACCATAAGCCAAAT 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 AGGACAATAGTTTCTAAAGCTGGGAAAGCGATCGCGCTATCTGATGACCATAAGCCAAAT 1072
Query 723 AGAAGCGATGAAAGAAAGCGAATTGAAAGCGCTGGTGGTGTTATCATGTGGGCAGGAACA 782
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1073 AGAAGCGATGAAAGAAAGCGAATTGAAAGTGCTGGTGGTGTTATCATGTGGGCAGGAACA 1132
Query 783 TGGAGAGTAGGTGGGGTGTTGGCAATGTCCCGGGCGTTTGGTAACAGAATGCTGAAGCAA 842
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1133 TGGAGAGTAGGTGGGGTGTTGGCTATGTCCCGGGCCTTTGGTAACAGAATGCTGAAGCAA 1192
Query 843 TTCGTTGTTGCTGAACCCGAGATACAAGATCTAGAGATAGATCATGAGGCTGAGTTGCTT 902
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1193 TTCGTTGTTGCTGAACCCGAGATACAAGATCTAGAGATAGATCATGAGGCCGAGTTGCTT 1252
Query 903 GTACTTGCAAGTGACGGTTTATGGGATGTGGTACCAAATGAGGATGCGGTAACTCTTGCT 962
|| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1253 GTGCTTGCAAGTGACGGTTTATGGGATGTGGTACCAAATGAGGATGCGGTAGCCCTTGCT 1312
Query 963 CAGAGCGAGGAGGAGCCTGAGGCAGCTGCCCGCAAGTTAACTGACACTGCCTTT-GCCCG 1021
||||||||||| ||||| || |||||||||||||||||||||||||||||||| ||| |
Sbjct 1313 CAGAGCGAGGAAGAGCCCGAAGCAGCTGCCCGCAAGTTAACTGACACTGCCTTCAGCC-G 1371
Query 1022 TGGCAGTGCAGACAACATCACGTGCATTGTTGTTAAATTCCGCCATGATAAGACCGAATC 1081
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1372 TGGCAGTGCAGACAACATCACGTGCATTGTTGTTAAATTCCGTCATGATAAGACAGAATC 1431
Query 1082 TCCTAAAATC-AAACCAAACGCCATGGCTGAGGCGGAACCTGAACTGAACCCCACAGCTG 1140
|||||||||| |||| ||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1432 TCCTAAAATCGAAAC-AAACGCCATGGCTGAATCGGAACCTGAACTGAACCCCACAACTG 1490
Query 1141 AAGTGGAACCCGAATCAAACCCCAGTACTGAAATGGAAACTGAATCAAGCCCCAAAGCTG 1200
|| ||||||| ||||||||||||||||||| | ||||||||||||||| |||||||||||
Sbjct 1491 AACTGGAACCTGAATCAAACCCCAGTACTGCATTGGAAACTGAATCAATCCCCAAAGCTG 1550
Query 1201 AACTGGAATCCAAACCTGATGCTATACCCGATCCAACACCGGAAACCGAACCAGAGACCA 1260
||||||||||| |||||||||||||||| ||||||| ||| |||||||||||||||||||
Sbjct 1551 AACTGGAATCCGAACCTGATGCTATACCTGATCCAAAACCTGAAACCGAACCAGAGACCA 1610
Query 1261 AGGGTGAGAAAGCAGGTGAGTAAGGTAGCAGCCAGGGAAAGGT 1303
||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 1611 AGGGTGAGAAAGCTGGTGAGTAAGGTAGCAGCCGGGGAAAGGT 1653
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64106095965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5