BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949899
Length=622
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53160.2 | Symbols: RCAR3, PYL8 | regulatory components of A... 905 0.0
> AT5G53160.2 | Symbols: RCAR3, PYL8 | regulatory components of
ABA receptor 3 | chr5:21560718-21562260 FORWARD LENGTH=1182
Length=1182
Score = 905 bits (490), Expect = 0.0
Identities = 572/609 (94%), Gaps = 15/609 (2%)
Strand=Plus/Plus
Query 14 gaagaagaTGGAAGTTAACGGGATTGAGAACTTGACGAATCAGAATCCGAATCTGGAAAG 73
|||||||||||||| |||||||||||||||||| | | | ||||||||||| ||||||
Sbjct 302 GAAGAAGATGGAAGCTAACGGGATTGAGAACTT---G-A-C-GAATCCGAATCAGGAAAG 355
Query 74 AGAGTTTATTAGGAGACATCATAAACATGAGCTTGTTGAGAATCAGTGTAGCTCTACGCT 133
||||||||| |||||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 356 AGAGTTTATAAGGAGACATCATAAGCATGAGCTTGTGGATAATCAGTGTAGCTCTACGCT 415
Query 134 TGTTAAACATATCAACGCTCCTGTTCATATTGTGTGGTCACTTGTGAGAAGATTTGATCA 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 TGTTAAACATATCAACGCTCCTGTTCATATTGTGTGGTCACTTGTGAGAAGATTTGATCA 475
Query 194 GCCACAGAAGTATAAACCATTTATCAGTAGGTGTGTGGTGAAAGGAAACATGGAGATTGG 253
||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 476 GCCACAGAAGTATAAGCCGTTTATCAGTAGATGTGTGGTGAAAGGAAACATGGAGATTGG 535
Query 254 TACAGTAAGAGAAGTTGATGTCAAATCAGGTTTACCAGCTACTAGAAGCACTGAGAGATT 313
||||||||||||||||||||| ||||| || ||||||| ||||||||||||||||||||
Sbjct 536 TACAGTAAGAGAAGTTGATGTGAAATCTGGACTACCAGCAACTAGAAGCACTGAGAGATT 595
Query 314 GGAGTTACTTGATGATAATGAGCATATTCTCAGTATCAGAATCGTTGGTGGTGATCATAG 373
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 GGAGTTACTTGATGACAATGAGCATATTCTCAGTATCAGAATCGTTGGTGGTGATCATAG 655
Query 374 ACTCAAGAACTATTCTTCAATCATTTCTCTTCACCCTGAGACTATAGAAGGAAGAATAGG 433
||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 656 ACTTAAGAACTATTCTTCAATCATCTCTCTTCACCCCGAGACTATAGAAGGAAGAATAGG 715
Query 434 GACACTTGTGATTGAGTCATTTGTGGTTGATGTACCAGAAGGAAACACAAAGGATGAGAC 493
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 AACACTTGTGATTGAGTCATTTGTGGTTGATGTACCAGAAGGAAACACAAAGGATGAGAC 775
Query 494 TTGTTACTTTGTTGAAGCTTTAATCAAATGCAATCTTAAATCTTTAGCTGATATCTCTGA 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 TTGTTACTTTGTTGAAGCTTTAATCAAATGCAATCTTAAATCTTTAGCTGATATCTCTGA 835
Query 554 ACGTCTTGCGGTTCAAGACACGACAACAGAATCCATCAACAGAGTTTAAAGATCTAAGGA 613
||||||||||||||||||||||||| ||||| | |||| |||||||| |||||
Sbjct 836 ACGTCTTGCGGTTCAAGACACGACA---GAATCGA------GAGTCTAAAGATCAAAGGA 886
Query 614 GTAAGAAAC 622
|||||||||
Sbjct 887 GTAAGAAAC 895
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29989785759
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5