BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949914
Length=550
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27770.1 | Symbols: ACA1, PEA1 | autoinhibited Ca2+-ATPase 1... 580 3e-165
> AT1G27770.1 | Symbols: ACA1, PEA1 | autoinhibited Ca2+-ATPase
1 | chr1:9671638-9676157 REVERSE LENGTH=3484
Length=3484
Score = 580 bits (314), Expect = 3e-165
Identities = 377/408 (92%), Gaps = 2/408 (0%)
Strand=Plus/Plus
Query 117 GAGATTGTTGTGGGCAAAGGAAACAAAACCGAGATACTGGGAACACCCACAAAAACTGCT 176
|||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||
Sbjct 1681 GAGATTGTTGTGGGCAAAGGAAACAAAACCGAGATACTGGGAACTCCTACAGAAACTGCT 1740
Query 177 CTGCTAGAATTTGGGTCGTCACTCGGAGGGGACTTCCAGGAAGTAAGACAAGCCTCAAAT 236
||| |||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1741 CTGTTAGAATTTGGGTTGTCACTCGGAGGGGACTTCCAAGAAGTAAGGCAAGCCTCAAAT 1800
Query 237 GTTGTGAGAGTTGAGCCCTTCAACTCTACAAAGAAAAGAATGAGAGTTGTCATTGAGGTG 296
||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||| ||
Sbjct 1801 GTTGTGAAAGTTGAGCCCTTTAACTCTACAAAGAAAAGAATGGGAGTTGTCATTGAGCTG 1860
Query 297 CCTGAAGGACATTTCTGGGCGCATTGTAAGGGTGCTTCTGAGATAGTTTTAGATTCTTGT 356
|||||| |||||||| |||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1861 CCTGAAAGACATTTCCGGGCACATTGTAAGGGTGCTTCAGAGATAGTTTTAGATTCTTGT 1920
Query 357 GATAAGTACATCAACAAAGATGGTGAAGTTGTTTCC-CTTGATGAAGAATCTACCAGTCA 415
||||||||||||||||||||||||||||||||| || || |||||| |||| ||||||||
Sbjct 1921 GATAAGTACATCAACAAAGATGGTGAAGTTGTT-CCTCTCGATGAAAAATCGACCAGTCA 1979
Query 416 CCTAAAGAACATAATCGAGGAATTTGCTAGTGAAGCACTTCAAACTCTTTGCCTTGCTTA 475
||| ||||||||||| |||||||||||||| |||||||||| |||||||||||| || ||
Sbjct 1980 CCTGAAGAACATAATTGAGGAATTTGCTAGCGAAGCACTTCGAACTCTTTGCCTAGCGTA 2039
Query 476 TTTCGAAATTGGTGATGAATTCTCATTAGAACCGCGTATACCAAGTGG 523
|||||||||||||||||||||||||||||| | | ||| ||||||||
Sbjct 2040 TTTCGAAATTGGTGATGAATTCTCATTAGAGGCTCCTATTCCAAGTGG 2087
Score = 198 bits (107), Expect = 4e-50
Identities = 115/119 (97%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 1 ATCTAGCTGCTTGTGAGACAATGGGATCTGCAACAACTATTTGTAGTGACAAGACTAGAA 60
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1466 ATCTTGCTGCTTGTGAGACAATGGGATCTGCAACAACTATTTGTAGTGACAAAACTGGAA 1525
Query 61 CTCTTACAACAGATCACATGACAGTTGTAAAAGCCTGCATCTGTGAACAAGCCAAAGAG 119
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1526 CTCTTACAACAAATCACATGACAGTTGTAAAAGCCTGCATCTGTGAACAAGCCAAAGAG 1584
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26372927175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5