BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949915

Length=256
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G30810.1 | Symbols:  | Transcription factor jumonji (jmj) fa...   213    6e-55


> AT1G30810.1 | Symbols:  | Transcription factor jumonji (jmj) 
family protein / zinc finger (C5HC2 type) family protein | chr1:10936765-10942292 
REVERSE LENGTH=4156
Length=4156

 Score =  213 bits (115),  Expect = 6e-55
 Identities = 149/165 (90%), Gaps = 4/165 (2%)
 Strand=Plus/Plus

Query  69    AGGGCGTATCAGGCTGGATTCAACTGCGGTTTCAATC-GCGCTGAAGCGGTTAATGTGGC  127
             ||||||||||| ||||||||||||||||||||||| | |||| |||||||||||||||||
Sbjct  1496  AGGGCGTATCATGCTGGATTCAACTGCGGTTTCAA-CTGCGCAGAAGCGGTTAATGTGGC  1554

Query  128   TCCGGTTTATCGGTTGGCTCATGGACAGAATGTC-GTAGAACTATATAGTAAAGAGACAA  186
             ||||||| || ||||||||||||||||||| | | || ||||||||||||||||||||||
Sbjct  1555  TCCGGTTGATTGGTTGGCTCATGGACAGAACG-CTGTGGAACTATATAGTAAAGAGACAA  1613

Query  187   GGAAGATTTCTCTGTCTCATGACAAACTTCTCCTCGGAGCATCTT  231
             |||||| |||||||||||| ||||| ||||| || |||||| |||
Sbjct  1614  GGAAGACTTCTCTGTCTCACGACAAGCTTCTTCTTGGAGCAGCTT  1658



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11662117768


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5