BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949918

Length=478
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G53280.1 | Symbols: PDV1 | plastid division1 | chr5:21607507...   699    0.0  


> AT5G53280.1 | Symbols: PDV1 | plastid division1 | chr5:21607507-21609418 
FORWARD LENGTH=1236
Length=1236

 Score =  699 bits (378),  Expect = 0.0
 Identities = 435/463 (94%), Gaps = 2/463 (0%)
 Strand=Plus/Plus

Query  17   AGCAATGAGATTGGCTGAACACCACGGCAAGAACTATGGAGTCTTAGAGGAAGTTCTT-C  75
            |||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||| |
Sbjct  457  AGCAATGAGATTAGCTGAACACCACGGCAAGAACTATGGAGTCCTAGAGGAAGCTCTTGC  516

Query  76   AATTTGTTGGAAGCATTAAAACCACCTCACATTACGTTTCACCTGATCACCTCTACGATT  135
             ||||||||| ||||||||| ||| ||| |||||||||||||||||||||||||||||||
Sbjct  517  -ATTTGTTGGGAGCATTAAATCCAACTCGCATTACGTTTCACCTGATCACCTCTACGATT  575

Query  136  CCTCTCCAAACCCAGACGGAGCAAACTCTACTCCTGGTGGAATAAAGTCAAACTTTGTGA  195
            |||||| ||||||||||||||||||||||| ||| | ||||||| ||||||||||||| |
Sbjct  576  CCTCTCGAAACCCAGACGGAGCAAACTCTATTCCAGATGGAATAGAGTCAAACTTTGTAA  635

Query  196  TCAACGCCTTTGCCTCAACTTTCGGGTTTGCAAAAAGAGCACTTGGATTCAACCATGTGA  255
            |||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||
Sbjct  636  TCAACGCCTTTGCCTCGACTTTCGGGTTTGCCAAGAGAGCACTTGGATTCAACCATGTGA  695

Query  256  AAGGTGTACTTGGAAACGCTGCTATATTTGCCATTAGCATGGTCGCTATGCTACATCTTC  315
            |||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct  696  AAGGCGTACTTGGAAACGCTGCTATATTTGCCATAAGCGTGGTCGCTATGCTACATCTTC  755

Query  316  ACCAAGTGGCTACTAGTGAACATCATCTACAGAAGAAAGAAGACAGATTCTACAGAAGCC  375
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  756  ACCAAGTGGCTACTAGTGAACATCATCTGCAGAAGAAAGAAGACAGATTCTACAGAAGCC  815

Query  376  AACAGAGGAAAACATACGGAAGAGATAAGTCTTCAGGTGACAGAAGTTTGGACCACTTGG  435
            |||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct  816  AACAAAGGAAAACATACGGAAGAGATAAGTCTTCAGCTGACAGAAGTTTGGATCACTTGG  875

Query  436  ACGTGATGATGGCTCGTGGTTAAGACCAGGGATCAAACTTGTC  478
            |||| |||||||||||||||||||||||| |||| ||||||||
Sbjct  876  ACGTAATGATGGCTCGTGGTTAAGACCAGAGATCGAACTTGTC  918



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22756068591


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5