BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg949919 Length=1086 Score E Sequences producing significant alignments: (Bits) Value AT5G53290.1 | Symbols: CRF3 | cytokinin response factor 3 | chr... 1502 0.0 AT1G43160.1 | Symbols: RAP2.6 | related to AP2 6 | chr1:1626381... 62.1 1e-08 > AT5G53290.1 | Symbols: CRF3 | cytokinin response factor 3 | chr5:21617813-21619267 REVERSE LENGTH=1455 Length=1455 Score = 1502 bits (813), Expect = 0.0 Identities = 1019/1114 (91%), Gaps = 31/1114 (3%) Strand=Plus/Plus Query 1 AGAGAGAGTCCATaaaa-aaaaaCTAATGGACGAATATATTGATTTCCGACCATTGAAGT 59 ||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||| Sbjct 217 AGAGAGAGTCCATAAAAGAAACAGTAATGGACGAATATATTGATTTCCGACCATTGAAGT 276 Query 60 ACACAGAGCACAAAACATCAATGACTAAATACACCAAAAAGTCATCGGAAAAACTTTCCG 119 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 277 ACACAGAGCACAAGACTTCAATGACTAAATACACCAAAAAGTCATCGGAAAAACTTTCCG 336 Query 120 GTGATCAGTCATTGCGAAAGGTTAGTATTTGTTATACCGATCCTGACGCAACAGATTCAT 179 ||| | |||||||| ||||||||||||||||||||| |||||||||||||||||||||| Sbjct 337 GTGGTAAGTCATTGAAAAAGGTTAGTATTTGTTATACTGATCCTGACGCAACAGATTCAT 396 Query 180 CAAGTGACGAAGACGAAGAAGATTTCTTGTTTCCTCGCCGGAGAGTCAACATATTCGTTA 239 ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 397 CAAGTGACGAAGACGAAGAAGATTTCTTGTTTCCTCGCCGGAGAGTCAAAAGATTCGTTA 456 Query 240 ACGAGATCACTGTCGAGCCTAGCTGCAACAACATCGTCACCGGAGTTTCAATCAAAGATA 299 ||||||||||||| ||||||||||| |||||| |||||||||||||||| || ||||||| Sbjct 457 ACGAGATCACTGTTGAGCCTAGCTGTAACAACGTCGTCACCGGAGTTTCGATGAAAGATA 516 Query 300 GAAAGAGACTCTCTTCCTCCTCCGATGACACTCAATCTCCGGCGTCGAATCGTCAACGTC 359 |||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||| Sbjct 517 GAAAGAGACTCTCTTCTTCCTCCGATGAAACTCAATCTCCGGCGTCGAGTCGTCAACGTC 576 Query 360 C---TAACAAAGTTTCAGTCTCCGGTCAGATAAAGAAGTTCCGCGGGGTTAGACAACGGC 416 | ||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 577 CTAATAACAAAGTTTCAGTCTCCGGTCAGATAAAGAAGTTCCGTGGTGTTAGACAACGGC 636 Query 417 CTTGGGGAAAATGGGCGGCGGAGATTCGAGATCCAGAGCAACGTCGGAGGATTTGGCTCG 476 | ||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct 637 CATGGGGGAAATGGGCGGCGGAGATTAGAGATCCGGAGCAACGTCGGAGGATTTGGCTCG 696 Query 477 GAACTTTTGAGACGGCGGAGGAAGCCGCCGTGGTTTATGATAACGCCGCTATAAGACTCC 536 | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 697 GGACTTTTGAGACGGCGGAGGAAGCTGCCGTGGTTTATGATAACGCCGCTATAAGACTCC 756 Query 537 GTGGACCGGACGCTTTAACTAATTTCTCTATACCGCCTCaagaagaagaagaagaagaag 596 |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 757 GTGGACCGGACGCTTTAACTAATTTCTCCATACCGCCTCAAGAAGAGGAAGAAGAAGAAG 816 Query 597 aa--g-aaCCGG--A---A-------CCGGTTGTCCCGACGATGACGACAACAACAACAT 641 || | |||||| | | |||||| | ||||| | | ||| ||||||||| Sbjct 817 AACCGGAACCGGTTATTGAGGAGAAACCGGTTATTATGACGACGCCAACACCAACAACAT 876 Query 642 CGAGTTCTGAATCAACTGAAGAC--TTT-CAACATCTCTCATCTCCTACTTCGGTTCTCA 698 |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 877 CGAGTTCTGAATCAACTGAAGAAGATTTACAACATCTCTCATCTCCTACTTCGGTTCTCA 936 Query 699 ATCTCCGGTCCGAAGAGATTCAACAAGTACAACAACCGTTTAAATCAGCTAAACCGGAAC 758 ||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 937 ATCACCGGTCAGAAGAGATTCAACAAGTACAACAACCGTTTAAATCAGCTAAACCCGAAC 996 Query 759 CGGAGATTTCTAATGCACCATGGTGGCATACCGGGTTTAATACCGGTTTAGGTGAATCAG 818 ||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 997 CGGGGGTTTCAAATGCACCATGGTGGCATACCGGGTTTAATACCGGTTTAGGTGAATCAG 1056 Query 819 ACGATTCATTTCCTTTGGATACTCCGTTTCTCGACAACTATTTCAATGAATCACCACCGG 878 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 1057 ACGATTCATTTCCTTTGGATACTCCGTTTCTTGACAACTATTTCAATGAATCACCACCAG 1116 Query 879 AGATGTCGATATTTGATCAACCAATGGGTCAAGTTTTCACTGAAAATGATGATATCTTCA 938 ||||||| |||||||| |||||||||| |||| ||||| |||||||||||||||||||| Sbjct 1117 AGATGTCAATATTTGACCAACCAATGGATCAAATTTTCTGTGAAAATGATGATATCTTCA 1176 Query 939 ATGCTATGTT---CTTGGGTAGTGGTGAAAGTATGAACATTGGAGATGATTTAACAAGTT 995 ||| |||||| ||||||| | | ||||| ||||||||||| |||||| |||||||||| Sbjct 1177 ATGATATGTTGTTCTTGGGT-G-G-TGAAACTATGAACATTGAAGATGAGTTAACAAGTT 1233 Query 996 CAAGTATCAATGACATTGGTTCAAAGTTTAGTGATTTTGATGATTTAAT-AT-T-AGATC 1052 | |||||||| || || ||||||| |||||||||||||||||||| | | || | ||||| Sbjct 1234 CTAGTATCAAAGATATGGGTTCAACGTTTAGTGATTTTGATGATTCATTGATATCAGATC 1293 Query 1053 TATTAGTTGCTTAATATGATGATCAGAGTGAAGA 1086 ||||||||||||||||||||||| |||||||||| Sbjct 1294 TATTAGTTGCTTAATATGATGATGAGAGTGAAGA 1327 > AT1G43160.1 | Symbols: RAP2.6 | related to AP2 6 | chr1:16263813-16264818 FORWARD LENGTH=910 Length=910 Score = 62.1 bits (33), Expect = 1e-08 Identities = 39/42 (93%), Gaps = 0/42 (0%) Strand=Plus/Plus Query 410 CAACGGCCTTGGGGAAAATGGGCGGCGGAGATTCGAGATCCA 451 ||||| || ||||||||||||||||||||||||||||| ||| Sbjct 372 CAACGACCATGGGGAAAATGGGCGGCGGAGATTCGAGACCCA 413 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53212577700 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5