BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949919
Length=1086
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53290.1 | Symbols: CRF3 | cytokinin response factor 3 | chr... 1502 0.0
AT1G43160.1 | Symbols: RAP2.6 | related to AP2 6 | chr1:1626381... 62.1 1e-08
> AT5G53290.1 | Symbols: CRF3 | cytokinin response factor 3 | chr5:21617813-21619267
REVERSE LENGTH=1455
Length=1455
Score = 1502 bits (813), Expect = 0.0
Identities = 1019/1114 (91%), Gaps = 31/1114 (3%)
Strand=Plus/Plus
Query 1 AGAGAGAGTCCATaaaa-aaaaaCTAATGGACGAATATATTGATTTCCGACCATTGAAGT 59
||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||
Sbjct 217 AGAGAGAGTCCATAAAAGAAACAGTAATGGACGAATATATTGATTTCCGACCATTGAAGT 276
Query 60 ACACAGAGCACAAAACATCAATGACTAAATACACCAAAAAGTCATCGGAAAAACTTTCCG 119
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 277 ACACAGAGCACAAGACTTCAATGACTAAATACACCAAAAAGTCATCGGAAAAACTTTCCG 336
Query 120 GTGATCAGTCATTGCGAAAGGTTAGTATTTGTTATACCGATCCTGACGCAACAGATTCAT 179
||| | |||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 337 GTGGTAAGTCATTGAAAAAGGTTAGTATTTGTTATACTGATCCTGACGCAACAGATTCAT 396
Query 180 CAAGTGACGAAGACGAAGAAGATTTCTTGTTTCCTCGCCGGAGAGTCAACATATTCGTTA 239
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 397 CAAGTGACGAAGACGAAGAAGATTTCTTGTTTCCTCGCCGGAGAGTCAAAAGATTCGTTA 456
Query 240 ACGAGATCACTGTCGAGCCTAGCTGCAACAACATCGTCACCGGAGTTTCAATCAAAGATA 299
||||||||||||| ||||||||||| |||||| |||||||||||||||| || |||||||
Sbjct 457 ACGAGATCACTGTTGAGCCTAGCTGTAACAACGTCGTCACCGGAGTTTCGATGAAAGATA 516
Query 300 GAAAGAGACTCTCTTCCTCCTCCGATGACACTCAATCTCCGGCGTCGAATCGTCAACGTC 359
|||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 517 GAAAGAGACTCTCTTCTTCCTCCGATGAAACTCAATCTCCGGCGTCGAGTCGTCAACGTC 576
Query 360 C---TAACAAAGTTTCAGTCTCCGGTCAGATAAAGAAGTTCCGCGGGGTTAGACAACGGC 416
| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 577 CTAATAACAAAGTTTCAGTCTCCGGTCAGATAAAGAAGTTCCGTGGTGTTAGACAACGGC 636
Query 417 CTTGGGGAAAATGGGCGGCGGAGATTCGAGATCCAGAGCAACGTCGGAGGATTTGGCTCG 476
| ||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 637 CATGGGGGAAATGGGCGGCGGAGATTAGAGATCCGGAGCAACGTCGGAGGATTTGGCTCG 696
Query 477 GAACTTTTGAGACGGCGGAGGAAGCCGCCGTGGTTTATGATAACGCCGCTATAAGACTCC 536
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 697 GGACTTTTGAGACGGCGGAGGAAGCTGCCGTGGTTTATGATAACGCCGCTATAAGACTCC 756
Query 537 GTGGACCGGACGCTTTAACTAATTTCTCTATACCGCCTCaagaagaagaagaagaagaag 596
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 757 GTGGACCGGACGCTTTAACTAATTTCTCCATACCGCCTCAAGAAGAGGAAGAAGAAGAAG 816
Query 597 aa--g-aaCCGG--A---A-------CCGGTTGTCCCGACGATGACGACAACAACAACAT 641
|| | |||||| | | |||||| | ||||| | | ||| |||||||||
Sbjct 817 AACCGGAACCGGTTATTGAGGAGAAACCGGTTATTATGACGACGCCAACACCAACAACAT 876
Query 642 CGAGTTCTGAATCAACTGAAGAC--TTT-CAACATCTCTCATCTCCTACTTCGGTTCTCA 698
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 877 CGAGTTCTGAATCAACTGAAGAAGATTTACAACATCTCTCATCTCCTACTTCGGTTCTCA 936
Query 699 ATCTCCGGTCCGAAGAGATTCAACAAGTACAACAACCGTTTAAATCAGCTAAACCGGAAC 758
||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 937 ATCACCGGTCAGAAGAGATTCAACAAGTACAACAACCGTTTAAATCAGCTAAACCCGAAC 996
Query 759 CGGAGATTTCTAATGCACCATGGTGGCATACCGGGTTTAATACCGGTTTAGGTGAATCAG 818
||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 997 CGGGGGTTTCAAATGCACCATGGTGGCATACCGGGTTTAATACCGGTTTAGGTGAATCAG 1056
Query 819 ACGATTCATTTCCTTTGGATACTCCGTTTCTCGACAACTATTTCAATGAATCACCACCGG 878
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1057 ACGATTCATTTCCTTTGGATACTCCGTTTCTTGACAACTATTTCAATGAATCACCACCAG 1116
Query 879 AGATGTCGATATTTGATCAACCAATGGGTCAAGTTTTCACTGAAAATGATGATATCTTCA 938
||||||| |||||||| |||||||||| |||| ||||| ||||||||||||||||||||
Sbjct 1117 AGATGTCAATATTTGACCAACCAATGGATCAAATTTTCTGTGAAAATGATGATATCTTCA 1176
Query 939 ATGCTATGTT---CTTGGGTAGTGGTGAAAGTATGAACATTGGAGATGATTTAACAAGTT 995
||| |||||| ||||||| | | ||||| ||||||||||| |||||| ||||||||||
Sbjct 1177 ATGATATGTTGTTCTTGGGT-G-G-TGAAACTATGAACATTGAAGATGAGTTAACAAGTT 1233
Query 996 CAAGTATCAATGACATTGGTTCAAAGTTTAGTGATTTTGATGATTTAAT-AT-T-AGATC 1052
| |||||||| || || ||||||| |||||||||||||||||||| | | || | |||||
Sbjct 1234 CTAGTATCAAAGATATGGGTTCAACGTTTAGTGATTTTGATGATTCATTGATATCAGATC 1293
Query 1053 TATTAGTTGCTTAATATGATGATCAGAGTGAAGA 1086
||||||||||||||||||||||| ||||||||||
Sbjct 1294 TATTAGTTGCTTAATATGATGATGAGAGTGAAGA 1327
> AT1G43160.1 | Symbols: RAP2.6 | related to AP2 6 | chr1:16263813-16264818
FORWARD LENGTH=910
Length=910
Score = 62.1 bits (33), Expect = 1e-08
Identities = 39/42 (93%), Gaps = 0/42 (0%)
Strand=Plus/Plus
Query 410 CAACGGCCTTGGGGAAAATGGGCGGCGGAGATTCGAGATCCA 451
||||| || ||||||||||||||||||||||||||||| |||
Sbjct 372 CAACGACCATGGGGAAAATGGGCGGCGGAGATTCGAGACCCA 413
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53212577700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5