BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949921
Length=682
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53310.1 | Symbols: | myosin heavy chain-related | chr5:216... 957 0.0
> AT5G53310.1 | Symbols: | myosin heavy chain-related | chr5:21634581-21636355
FORWARD LENGTH=970
Length=970
Score = 957 bits (518), Expect = 0.0
Identities = 620/668 (93%), Gaps = 11/668 (2%)
Strand=Plus/Plus
Query 7 CGTCGCCGGGAGGAATGGACCGGTTTAAGGAGC-AACGGGGACCGAAGTTTGACGGCGAT 65
||||||||||||||||| ||||||| ||||||| || |||| |||||||| ||||||||
Sbjct 63 CGTCGCCGGGAGGAATGAACCGGTTGAAGGAGCAAAAGGGG-CCGAAGTTCGACGGCGAA 121
Query 66 GAATCTCCGCCACCTGATTTTGATGGCGGAGATGAAGATCGTAGTGTGGGGGAGGTAGAC 125
||||| || |||||||| ||| | ||||||||||| |||||||| |||||||||
Sbjct 122 GAATCACCTCCACCTGA-TTT--T------GATGAAGATCGAAGTGTGGGTGAGGTAGAC 172
Query 126 GGAGGAGATCAGACGCCATTCGCTGGAGGTAAAGTTAGGAGGAAAGCGTCTCGCTATAGA 185
||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 173 GGAGGAGATCACACGCCATTCGCTGGAGGTAAAGTCAGAAGGAAAGCGTCTCGCTATAGA 232
Query 186 GAGCATCGTGGTGACTATCTCCACGTCTCTTCGCGTCCTGGATTGATGCGAATTCTGGAG 245
|||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 233 GAGCATCGTGGTGACTATCTTCACGTTTCTTCTCGTCCTGGATTGATGCGAATTCTGGAG 292
Query 246 AAACAAGGTGATACGTCGATTCTTTTTGCTGATAAAGTTTTGAAGTTCACTGGCTCGGGG 305
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 293 AAACAAGGTGATACATCGATTCTTTTTGCTGATAAAGTTTTGAAGTTCACCGGCTCGGGG 352
Query 306 AAGATGAAACGGCGTATTTTTATTCTCACTGATTTTGCGATCTATCTAATTGATCCGGAG 365
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 353 AAGATGAAACGGCGTATTTTTATCCTCACTGATTTTGCGATCTATCTAATTGATCCCGAG 412
Query 366 ACTGAAGCTATGACCAGGAGAATAGCCCTGGCAGCAGTAGAGAAAATGTGTTTGAGTAAA 425
||||||||||||||||||||||| || || || |||||||||| |||||||| || |||
Sbjct 413 ACTGAAGCTATGACCAGGAGAATTGCTTTGTCATCAGTAGAGAAGATGTGTTTAAGCAAA 472
Query 426 TTGAGCGATAACTTCTTCGCTATCATTATTCCCACGGAATATGATCTGTTCATGGCCAGC 485
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 473 TTGAGTGATAACTTCTTCGCTATCATTATTCCCACGGAATATGATCTCTTCATGGCCAGC 532
Query 486 ACTCGGAAGACTGAGCTTGTTCAGGTCATGGTAGATGTGACTAAAAGTGCATCTGACTAT 545
||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 533 ACTAGGAAGACTGAGCTTGTTCAGGTCATGGTAGATGTCACTAAAAGTGCTTCTGACTAT 592
Query 546 GAACTTGAAGTGCTTCTCTCCAACAGATTTGAGTACAATGCTTCTGCCTCATTAGTAAAG 605
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 593 GAACTTGAAGTGCTTCTCTCTAACAGATTTGAGTACAATGCATCTGCCTCATTAGTAAAG 652
Query 606 GAAGTGTCTTTTGAGGAATCTGAAGGGGGTATCAAGACCAAATTTTTGTGGAAGTAACTA 665
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 653 GAAGTTTCTTTTGAGGAATCTGAAGGGGGTATCAAGACCAAATTTGTGTGGAAGTGACTA 712
Query 666 CATCTCAA 673
||||||||
Sbjct 713 CATCTCAA 720
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33003834579
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5