BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949924
Length=706
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53330.1 | Symbols: | Ubiquitin-associated/translation elon... 953 0.0
> AT5G53330.1 | Symbols: | Ubiquitin-associated/translation elongation
factor EF1B protein | chr5:21639217-21640963 FORWARD
LENGTH=932
Length=932
Score = 953 bits (516), Expect = 0.0
Identities = 652/715 (91%), Gaps = 20/715 (3%)
Strand=Plus/Plus
Query 3 AGAGAAA-AAACA-ACAACAATGGATTACGATTACAGAAACAAGTC---TGGTCCTTCGT 57
||| ||| ||||| |||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1 AGA-AAACAAACACACAACAATGGATTACGATTACAGAAACAAGTCTGGTGGTCCTTCTT 59
Query 58 ACCCTCGACCTATGTACGGACCTCCATCAACATCTTCTTCTCCAG-CATCTAACCATCCT 116
|||||||||||||||| |||||||||||||||||| ||||||| | ||||||||||||||
Sbjct 60 ACCCTCGACCTATGTATGGACCTCCATCAACATCTCCTTCTCC-GTCATCTAACCATCCT 118
Query 117 ATGTACGGATACCCTAAGATCGGTCAACAAACCGGTCACGG-TCAGCAATTTTTCCCTCC 175
|||||||| |||||||||||||||||||||||||||| ||| || || |||||| ||||
Sbjct 119 ATGTACGGTTACCCTAAGATCGGTCAACAAACCGGTCCCGGCCCA-CAGTTTTTCTCTCC 177
Query 176 GCCGGAGAGAAACTCTTCGTTTCAACATAACACTTCTCCCTCATCTGGATTAGGAATCAA 235
||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
Sbjct 178 GCCGGAGAGAAACTCTTCGTTTCAACATAACACTTCTCCTTCATCTGGAATAGGAATC-A 236
Query 236 G-GTGAATTTGAAGCCTGAGTATCGGATTACTCCGCCGCCTCAGTTGTTGCCTCGAGTTG 294
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 237 GAGTGAATTTGAAGCCTGAGTATCGGATTACTCCGCCGCCTCAGTTGTTGCCTCGAGTAG 296
Query 295 GAGATATTCATCGGAGTAGTTTTCAGTTCGATTTCGGTTTAGAGAGGAAAGTTCTTGCGG 354
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 297 GAGATATTCATCGGAGTAGTTTTCAGTTCGATTTCGGATTAGAGAGGAAAGTTCTCGCGG 356
Query 355 AGGCAGAGAAAGATAATCCAGATTGGAGTAAATTCGGGAGTGATAATCCACCGGCTAAGT 414
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 357 AGGCAGAGAAAGATAATCCAGATTGGAGTAAATTTGGGAGTGAGAATCCACCGGCTAAGT 416
Query 415 TTC-TGGAACCAACGCCGTCTTCAGTGAATGGAA-GCTTTGTTGGTGTAGATCCTGTAGT 472
||| || ||||| | || ||||||||| | || || | |||||||||| ||||||
Sbjct 417 TTCATG-AACCATCACCTTCTTCAGTGGGTCAAATGCA--G--GGTGTAGATCATGTAGT 471
Query 473 GATGAAATATGCTGCGTCTGGGCTGAACCCAGAAGCTGTCAACATTGCAGTTGCAAACTA 532
|||||||||| |||| |||||||| ||| ||||||||||||||| || |||||||||||
Sbjct 472 GATGAAATATACTGCTTCTGGGCTCAACAGAGAAGCTGTCAACATAGCTGTTGCAAACTA 531
Query 533 TGGTGATAATCCCACAAAGGTTCAAGAATTTGCAAATGGTTTCACAGCGATACGGGAGAT 592
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 532 TGGTGATAATCCCACAAAGGTTCAAGAATTTGCAAATGGGTTCACAGCGATACGGGAGAT 591
Query 593 GGGATTTCCAACAAACTCAGTCGCAGATGCTCTCTTCATGTTTGAGAATGATACCGAAAA 652
||| ||||| |||||| | || |||||||||||||||||||||||||| || || || ||
Sbjct 592 GGGTTTTCCGACAAACGCTGTTGCAGATGCTCTCTTCATGTTTGAGAACGACACTGATAA 651
Query 653 AGCACTGGCACATTTGCTCCATGGTTCTTCCTAAATTTGGCTTTCAACT-TTTAT 706
||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 652 GGCATTGGCACATTTGCTCCATGGTTCTTCCTAAATTTGGCTTTCAACTCTTTAT 706
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34209454107
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5