BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949926
Length=1765
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53350.1 | Symbols: CLPX | CLP protease regulatory subunit X... 2850 0.0
> AT5G53350.1 | Symbols: CLPX | CLP protease regulatory subunit
X | chr5:21643898-21647707 FORWARD LENGTH=2106
Length=2106
Score = 2850 bits (1543), Expect = 0.0
Identities = 1710/1787 (96%), Gaps = 25/1787 (1%)
Strand=Plus/Plus
Query 2 TTCTTCTTCTTCTTCGAAATCCGCCATGGCCGCGGCTTTAAGGTCGAATACGTCAAGAGA 61
||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 138 TTCTTCTACTTCTTCGCAATCCGCCATGGCCGCAGCTTTAAGGTCGAATACGTCAAGAGA 197
Query 62 AACCGCTTCTCTCACACTTTCTCAGTTTAGATACTTCT-TCTTCAACCGTATCCACACCG 120
|||||||||||| ||||||||||| ||||||||||| | |||||||||||||||||||||
Sbjct 198 AACCGCTTCTCTTACACTTTCTCATTTTAGATACTT-TATCTTCAACCGTATCCACACCG 256
Query 121 CTCGAACCGCCACGAG---TCCTCAGTGTAATCACCGTTCTAAAT-C-----------CC 165
||||||||||||| || |||||| ||||||||||||||||||| | ||
Sbjct 257 CTCGAACCGCCACAAGTCCTCCTCACTGTAATCACCGTTCTAAATCCGATGAGAAATTCC 316
Query 166 CCAATAAAATTTCCTCGCTTGGAACGAGTTTCTTGGATAATC---GAGGAGGAGAGAGAC 222
|| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 317 CCTATAAAATTTCCTCTCTTGGAACGAGTTTCTTGGATAATCGAGGAGGAGGAGAGAGAC 376
Query 223 GTAATTCGACTAAGTGTTATGCT--TCA-CAGAAGCTGAACGGTGTTGGTTCTTCTGTTG 279
||||||||||||||||||||||| ||| ||||||| | ||||||||||||||||||||
Sbjct 377 GTAATTCGACTAAGTGTTATGCTGCTCAGAAGAAGCTCAGCGGTGTTGGTTCTTCTGTTG 436
Query 280 TTATGCTGAGCTCACAAGGAGACCCACCGGATCTATGGCAGCCTCCGGGTGATGGAGTTT 339
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 437 TTATTCTGAGCTCACAAGGAGACCCACCGGATCTATGGCAGCCTCCTGGTGATGGAGTTT 496
Query 340 CTGTTAGGGTTAATGGGTCCAGTGTTAATCTGGGTCGTGGAGGTGGTGGTGGTGGAAGTA 399
| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 497 CCGTTAGGGTTAATGGGTCCAGTGTTAATCTCGGTCGTGGTGGTGGTGGTGGTGGAAGTA 556
Query 400 GTCCTGGTGGTCCTGGTAACGGAACTGGGTCGAATTCGAAAGAAGATTGTTGGGGTGGAT 459
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 557 GTCCTGGTGGTCCTGGTAACGGAACAGGGTCGAATTCGAAAGAAGATTGTTGGGGTGGAT 616
Query 460 CTAATCTTGGGTCTGATTTTCCGACACCAAAGGAGATATGTAAAGGTTTGAACAAGTTCG 519
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 617 CCAATCTTGGGTCTGATTTTCCGACACCAAAGGAGATATGTAAGGGTTTGAACAAGTTCG 676
Query 520 TGATTGGTCAAGAGAGAGCCAAAAAGGTACTTTCAGTGGCAGTTTACAATCACTACAAGA 579
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 TGATTGGTCAGGAAAGAGCCAAAAAGGTACTTTCAGTGGCAGTTTACAATCACTACAAGA 736
Query 580 GGATACATCACGAATCATCACAGAAACGGTCTGCGGGAGAAACCGATAGCACTGCAGTGA 639
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 737 GGATATATCACGAATCATCACAGAAACGGTCTGCGGGAGAAACAGATAGCACTGCAGCGA 796
Query 640 AACCAGCAGATGATGATATGGTAGAACTAGAGAAGAGTAACATTCTCCTGATGGGACCAA 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 797 AACCAGCAGATGATGATATGGTAGAACTAGAGAAGAGTAACATTCTCCTGATGGGACCAA 856
Query 700 CTGGGTCAGGGAAGACACTACTTGCGAAAACCTTGGCACGGTTTGTGAATGTTCCTTTTG 759
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 857 CTGGGTCAGGGAAGACACTACTTGCGAAAACCTTGGCACGATTTGTAAATGTTCCTTTTG 916
Query 760 TCATTGCGGATGCAACCACACTGACTCAGGCTGGTTATGTGGGAGAGGACGTCGAGTCTA 819
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 917 TCATTGCGGATGCAACCACCCTGACTCAGGCTGGTTATGTGGGAGAGGACGTCGAGTCTA 976
Query 820 TATTATACAAACTTCTCACAGTTGCAGATTATAATGTTGCAGCTGCACAGCAGGGGATTG 879
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 977 TATTATACAAACTTCTCACAGTTGCAGATTATAATGTTGCAGCTGCACAGCAAGGGATTG 1036
Query 880 TTTACATTGATGAAGTCGACAAGATAACAAAGAAGGCAGAAAGCCTTAACATCAGCAGAG 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 TTTACATTGATGAAGTCGACAAGATAACAAAGAAGGCAGAAAGCCTTAACATCAGCAGAG 1096
Query 940 ATGTATCAGGAGAAGGTGTTCAACAAGCATTGCTAAAAATGCTGGAAGGAACAATTGTAA 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1097 ATGTATCAGGAGAAGGTGTTCAACAAGCATTGCTAAAAATGCTGGAAGGAACAATTGTAA 1156
Query 1000 ATGTACCTGA-AAAGGGCGCTAGGAAACACCCTAGAGGTGACAATATCCAGATAGACACA 1058
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1157 ATGTACCTGAGAAAGG-CGCTAGGAAACACCCTAGAGGTGACAATATCCAGATAGACACA 1215
Query 1059 AAGGACATACTCTTTATATGTGGTGGTGCTTTTGTAGACATTGAAAAGACTATCTCAGAG 1118
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1216 AAGGACATACTCTTCATATGTGGTGGTGCTTTTGTAGACATTGAAAAGACTATCTCAGAG 1275
Query 1119 AGGCGCCATGATTCTTCAATAGGGTTTGGTGCTCCTGTACGTGCTAACATGAGGGCTGGT 1178
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1276 AGGCGCCATGATTCTTCAATAGGGTTTGGTGCTCCTGTACGTGCCAACATGAGGGCTGGT 1335
Query 1179 GGTGTTACAAACGCCGCTGTTGCATCAAACCTAATGGAAACTGTGGAAAGCAGTGACCTG 1238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1336 GGTGTTACAAACGCCGCTGTTGCATCAAACCTAATGGAAACTGTGGAAAGCAGTGACCTG 1395
Query 1239 ATTGCTTATGGTTTAATACCTGAATTTGTTGGAAGATTTCCAGTTCTCGTCAGTTTGTCT 1298
|||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1396 ATTGCTTATGGTTTGATTCCTGAATTTGTTGGACGATTTCCAGTTCTCGTCAGTTTGTCT 1455
Query 1299 GCTTTGACTGAGAACCAACTTATGCAGGTGTTGACAGAACCCAAGAACGCTCTTGGAAAG 1358
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1456 GCTTTGACTGAGAACCAGCTTATGCAGGTGTTGACAGAACCCAAGAACGCTCTTGGAAAG 1515
Query 1359 CAATACAAAAAGATGTACCAGATGAATAGTGTAAAGCTGCATTTCACGGAAAGCGCACTG 1418
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1516 CAATACAAAAAGATGTACCAGATGAATAGTGTAAAGCTGCATTTCACAGAAAGCGCACTG 1575
Query 1419 CGGCTTATAGCTAGAAAAGCAATAACGAAAAACACGGGTGCTCGTGGCTTAAGAGCTCTT 1478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1576 CGGCTTATAGCTAGAAAAGCAATAACGAAAAACACGGGTGCTCGTGGCTTAAGAGCTCTT 1635
Query 1479 CTAGAAAGCATCCTCATGGACTCTATGTACGAGATTCCGGACGAGAGTACAGGCAGCGAC 1538
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1636 CTAGAAAGCATCCTCATGGACTCTATGTACGAGATTCCGGACGAGGGTACAGGCAGCGAT 1695
Query 1539 ATGATAGAGGCGGTTGTGGTGGATGAAGAAGCAGTTGAAGGAGAAGGGCGTAGAGGCTCT 1598
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1696 ATGATAGAAGCGGTTGTGGTGGATGAAGAAGCAGTTGAAGGAGAAGGGCGTCGAGGCTCT 1755
Query 1599 GGAGCTAAGATTCTCCGTGGTAAAGGAGCATTGGGTCGGTATCTCTCCGAAACCAAATCC 1658
|||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||
Sbjct 1756 GGAGCTAAGATTCTCCGTGGTAAAGGAGCATTGGCTCGGTATCTCTCTGAAACCAATTCC 1815
Query 1659 AAGGATTCCCCACAGACGACAAAGGACGGATCAGATGGAGAAACGGAGGTGGAGGCGGAG 1718
|| ||||||||||||||||||||||| ||||| ||||||||||| || |||||||| |||
Sbjct 1816 AAAGATTCCCCACAGACGACAAAGGAGGGATCGGATGGAGAAACTGAAGTGGAGGCAGAG 1875
Query 1719 ATTCCATCTGTTGTAGCAAGTATGTAATAATGATCACCATCATCATC 1765
|||||||||||||||||||||||||||| || | |||||||||||||
Sbjct 1876 ATTCCATCTGTTGTAGCAAGTATGTAATGATCACCACCATCATCATC 1922
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87298747755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5