BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949927
Length=861
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53360.1 | Symbols: | TRAF-like superfamily protein | chr5:... 736 0.0
> AT5G53360.1 | Symbols: | TRAF-like superfamily protein | chr5:21647902-21649567
FORWARD LENGTH=1380
Length=1380
Score = 736 bits (398), Expect = 0.0
Identities = 564/638 (88%), Gaps = 35/638 (5%)
Strand=Plus/Plus
Query 206 GGTATTTCATTGTTTTGGACAATACTTTTGTCTTCATTTTGAAGCGTTTCAGCTCGGTAT 265
||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 716 GGTGTTTCAATGTTTTGGTCAATACTTTTGTCTTCATTTTGAAGCGTTTCAGCTCGGTAT 775
Query 266 GGCTCCAGTATACATGGCGTTTCTGAGATTCATGGGAGATGAAGAAGACGCACGAAAATA 325
||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct 776 GGCTCCAGTTTACATGGCGTTTCTGAGATTCATGGGCGATGAAGATGACGCACGAAACTA 835
Query 326 CACTTACAGTTTAGAAGTTGGAGGCAGTGGGAGAAAACTCACATGGGAAGGAACACCAAG 385
|| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 836 TACATACAGTTTAGAAGTTGGAGGCAGTGGGAGAAAACAGACATGGGAAGGGACACCAAG 895
Query 386 AAGTGTCCGAGATAGTCACAGGAATA-TCAGAGAAAGTCACGACGGTCTAATAATCCAAA 444
||||||| |||||||||||||||| | ||||||| ||||| |||||||| ||||||||||
Sbjct 896 AAGTGTCAGAGATAGTCACAGGAA-AGTCAGAGACAGTCATGACGGTCTTATAATCCAAA 954
Query 445 GAAACATGGCACTCTTCTTTTCGGGTGGAGA-AAGGAAAGAACTGAAACTTAAGAGTCAC 503
|||||||||||||||||||||| |||||||| ||| |||||||||||||||| |||||||
Sbjct 955 GAAACATGGCACTCTTCTTTTCCGGTGGAGACAAG-AAAGAACTGAAACTTA-GAGTCAC 1012
Query 504 CGGAAGAATCTGGAAAGAGCAACAGAATCCAGATTCTGGTGTTTGCATACCAAACCTCT- 562
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1013 TGGAAGAATCTGGAAAGAGCAACAGAATCCAGATTCTGGTGTTTGCATA--A--CCTCTA 1068
Query 563 -GTGT-GTAGCTAAATCAAAACCTGCCAACTCTTCAAACCTATCTTCAGGTGTTCGATC- 619
|||| |||||| |||||||| | |||||| ||||||||||||||| ||||||||| ||
Sbjct 1069 TGTGTAGTAGCTGAATCAAAATCAGCCAACCCTTCAAACCTATCTTAAGGTGTTCGTTCG 1128
Query 620 -T--CTTCGATTTGATTTAGTTTCGGGTTCT-TGTGttttttt--t--A---TCCAGACA 668
| |||| ||| ||||| |||||||||| | |||||| |||| | | |||||| |
Sbjct 1129 ATTTCTTCAATTCGATTTTGTTTCGGGTT-TGTGTGTTGTTTTGGTCCAGAATCCAGATA 1187
Query 669 GCTTCTTGT-CGTTCAAAAGTGTATTTAGAGAAGAAGAAAAGAGTTGTTCCATCTGCCAG 727
||||||| | | |||||||||||||||||||||| | |||||||||||||||| ||||||
Sbjct 1188 GCTTCTT-TACATTCAAAAGTGTATTTAGAGAAGTA-AAAAGAGTTGTTCCATTTGCCAG 1245
Query 728 AAATGTGCAGACAGGTCGCAAAAGTTGCAATCTACACAACTTCCAAAGATTGAATCTTTC 787
||||||||||| ||||| ||||||||||||| | || ||||||||||||||| ||||
Sbjct 1246 AAATGTGCAGA-AGGTCACAAAAGTTGCAAT--A-AC---TTCCAAAGATTGAATATTTC 1298
Query 788 CATAAATGTATATCTTAATATTGTAAGATCTAAGCAAA 825
||||||||||||| || | || ||||||||| ||||||
Sbjct 1299 CATAAATGTATATATTCACATGGTAAGATCTGAGCAAA 1336
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41995746892
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5