BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949931
Length=1507
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53390.1 | Symbols: | O-acyltransferase (WSD1-like) family ... 2338 0.0
> AT5G53390.1 | Symbols: | O-acyltransferase (WSD1-like) family
protein | chr5:21656734-21659262 REVERSE LENGTH=1733
Length=1733
Score = 2338 bits (1266), Expect = 0.0
Identities = 1428/1506 (95%), Gaps = 12/1506 (1%)
Strand=Plus/Plus
Query 3 CCACTAATAGTTTAAAGAATGGGTGAAG-CGAAGAACAAGGCGAGGGAGACGGTGGAGGA 61
|||| ||||| | ||||||||||||||| | ||||| | ||| |||||||||||||||||
Sbjct 38 CCACAAATAGGTCAAAGAATGGGTGAAGAC-AAGAAGACGGCAAGGGAGACGGTGGAGGA 96
Query 62 GGAGCCACTCAGCCCATGTTCACGGCTGTTTAATTCGCCGGATTTTAACTGTGCGATAAT 121
||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 97 GGAACCACTTAGCCCATGTTCACGGCTGTTCAATTCGCCGGATTTTAACTGTGCAATAAT 156
Query 122 CGTGACAATGGGATCTAGAGTCAAAGGAGACACACCTGCCATCATCCACGGCCTTGAACA 181
||| ||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||
Sbjct 157 CGTTACAATGGGATCTAAAGTTAAAGGAGACACACCAGCCATCATCCACGGCCTTGAACA 216
Query 182 CACCCTCGTAAACCACCCTCGCTTTTCTAGCATTTTAGAGATGAACAATGGTAAGAAAGG 241
|||||||||||||||||||||||| |||||||||||||||||||||||||| | ||
Sbjct 217 CACCCTCGTAAACCACCCTCGCTTCTCTAGCATTTTAGAGATGAACAATGG---G-AA-- 270
Query 242 GAAACCGCGTTGGGTTCGGACAAAAGTTAAAGTAGAAGAGCATGTGATTGTTCCTGACAT 301
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 271 GAAGCCGCGTTGGGTTCGGACAAAAGTTAAAGTAGAAGAGCATGTGATTGTTCCTGATGT 330
Query 302 AGATCCCGACATTGAAAATCCTGATCAGTATCTTGAAGACTATATCTCTAAGTTAACGAC 361
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 331 GGATCCCGACATTGAAAATCCGGATCAGTATCTTGAAGACTATATCTCTAAGTTAACGAC 390
Query 362 CATTCCTATGGATTTGTCTAAGCCATTATGGGAAATGCACTTACTAGGCCTCAAAACATT 421
||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 391 CATTCCTATGGATTTGTCTAAACCATTATGGGAAATGCACTTACTAGGCGTCAAAACATC 450
Query 422 GAACGCTGAATCCTTTGCCATTCTCAAGATCCATCATTCTTTGGGTGATGGAATGTCTCT 481
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 451 GAACGCTGAATCCTATGCTATTCTCAAGATCCATCATTCTTTGGGTGATGGAATGTCTCT 510
Query 482 CATGTCTCTTCTCCTAGCTTGCACCCGCAAAACATCAGACCCCCAGGCTTTGCCTACCGT 541
|||||||||| | || ||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 511 CATGTCTCTTTTACTGGCTTGTACCCGCAAAACATCAGACCCCGAGGCTTTGCCTACCGT 570
Query 542 TGCGGTTCAGAAAAAACGCTTTGGACCGAGCTGCAACAGCGGGTTTTTCAACAAGATTTG 601
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 TGCGGTTCATAAAAAACGCTTTGGACCGAGCTGCAACAGCGGGTTTTTCAACAAGATTTG 630
Query 602 GTGGTTATTTGTAGGGCTCTGGTTCATCATAAGATTGCTATTCAACACTTTTGTTGATAT 661
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 631 GTGGTTATTTGTAGGGCTCTGGTTCATCCTAAGATTGCTATTCAACACTTTTGTTGATAT 690
Query 662 CTTAATGTTTGCTCTTACAATATTTTTCTTGAGGGATACGGAGACTCCTCTCTTGGCCAA 721
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 691 CTTAATGTTTGCTCTTACAATATTTGTCTTGAGGGATACGGAGACTCCTCTCTTGGCCAA 750
Query 722 ACCCGGTAGTGAACTTA-CACCTAAGAGGTTCATCCACCGGATTATCAGCTTTGACGATG 780
||||||||||||||||| | |||||||||||| |||||||||||||||| ||||||||||
Sbjct 751 ACCCGGTAGTGAACTTATC-CCTAAGAGGTTCGTCCACCGGATTATCAGTTTTGACGATG 809
Query 781 TTAAGCTGGTGAAAAATGCAATGAAAATGACGGTAAACGATGTTCTCCTTGGAGTAACCC 840
|||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| |
Sbjct 810 TTAAGCTGGTGAAAAACGCAATGAAAATGACGGTGAACGATGTTCTTCTTGGAGTAACGC 869
Query 841 AAGCCGGGCTTTCACGGTATCTTAGTCGAAGATATGATCAAGAAGCAACACCAAAATCAA 900
||||||| ||||| || || |||||||||| ||||||||||||||||||||| ||||| |
Sbjct 870 AAGCCGGACTTTCGCGTTACCTTAGTCGAAAATATGATCAAGAAGCAACACCGAAATCGA 929
Query 901 AAGAGTCGATGAGGAAAATCCGACTTCGTTCAGCCATTATGATTAACTTGAGACCAAACA 960
||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 930 AAGAGTCCATGAGGAGAATCCGACTTCGTTCAGCCATTATGATTAACTTGAGACCAAACG 989
Query 961 CAGGAATTGAGGCTCTAGCGGATATGATGGCCAAGAAATCTAAATGCAGATGGGGAAATC 1020
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 990 CAGGAATTGAGGCTCTAGCGGATATGATGGCCAAGAAATCAAAATGCAGATGGGGAAATC 1049
Query 1021 TCTTCGGCTACATTCTCCTACCGTTCTCCGTTGGGCTAGAGGCCGATCCTCTAGAATACG 1080
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1050 TCTTCGGCTACATTCTCCTACCGTTCTCCGTTGGGCTAGAGACCGATCCTCTAGAATACG 1109
Query 1081 TGCGCCAAGCTAAAGCCACGATCGACCGCAAGAAAAACTCTCTTGAAGCCGTATTCTCCA 1140
|||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||
Sbjct 1110 TGCGCCAAGCTAAAGCCACGATTGACCGCAAGAAACACTCTCTAGAAGCCGTATTCTCCA 1169
Query 1141 TGGCATTCTTTAAATTGATATTAAAAGTTCTTGGGCTCAAGGCAAGTGTAGTTCTTGTAA 1200
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1170 TGGCATTCTTTAAATTGATACTAAAAGTTCTTGGGCTCAAGGCAAGTGTAGTTCTTGTAA 1229
Query 1201 GGAAAGTGATCCATAGCACAACGTTGA-CATTTTCAAATGTGGTCGGTCCAAAGGAAGAA 1259
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1230 GGAAAGTGATCCATAGCACAACGTT-ATCATTTTCAAATGTGGTCGGTCCAAAGGAAGAA 1288
Query 1260 ATTACATTCCATGGTCACCCACTGAATTATATCTCCCCTTGTGTTTTTGGCCACCCACAT 1319
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1289 ATTACATTCCATGGTCACCCACTGAATTATATCTCCCCATGTGTTTTTGGCCACCCACAT 1348
Query 1320 GCTCTTACTCTACATTTCCAGAGCTATGCGAACAAGGTCATAATATCGGTAACGGCTGAT 1379
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1349 GCTCTTACTCTACATTTCCAGACCTACGCGAACAAGGTCATAATATCGGTAACGGCTGAT 1408
Query 1380 CCAACGGTCATTCCTGACCCTCACAAGATGTGTGATGATTTGGTGGAGTCTCTGAAGATA 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1409 CCAACGGTCATTCCTGACCCTCACAAGATGTGTGATGATTTGGTGGAGTCTCTCAAGATG 1468
Query 1440 ATTAAATCCGCTGTCCTAGAAAGAGGGTTATATGAGATTGACGTCTAGTTAAAGCTCTTT 1499
|||||| ||||||| || ||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1469 ATTAAAGCCGCTGTTCTTGAAAGAGGGTTATATGAGATTGAGGTCTAACTAAAGCTCTTT 1528
Query 1500 TGTTGT 1505
||||||
Sbjct 1529 TGTTGT 1534
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74347007145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5