BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949952
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49010.1 | Symbols: SLD5 | DNA replication protein-related |... 195 3e-49
> AT5G49010.1 | Symbols: SLD5 | DNA replication protein-related
| chr5:19866231-19868365 FORWARD LENGTH=1187
Length=1187
Score = 195 bits (105), Expect = 3e-49
Identities = 117/123 (95%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 73 GAAGAAACAATTGAAGATTATGTGGAAAATGGCATAGACCCTCTCATGGTGTCTCTTTAT 132
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||
Sbjct 402 GAAGAAACAATTGAAGATTATGTGGAAAATGGCATAGATCCTCTGGTGGTGTCTCTATAT 461
Query 133 CAGATGGATTTGGACAGAGCCCAGTTTCTACTCAGATCTTATCTCAGGGTTAGGCTTCTC 192
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 462 CAGATGGATTTGGACAGAGCCCAGTTTCTACTCAGATCATATCTCAGAGTTAGGCTTCTC 521
Query 193 AAG 195
|||
Sbjct 522 AAG 524
Score = 93.5 bits (50), Expect = 1e-18
Identities = 54/56 (96%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 7 GATTATGAAACACTGATGTCGACATCGGACGTTGAGCTATTGAAGAGGGCGTGGCG 62
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 267 GATTACGAAACATTGATGTCGACATCGGACGTTGAGCTATTGAAGAGGGCGTGGCG 322
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13823630975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5