BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949955

Length=403
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G23955.2 | Symbols:  | F-box family protein | chr3:8655023-8...   104    6e-22


> AT3G23955.2 | Symbols:  | F-box family protein | chr3:8655023-8657439 
REVERSE LENGTH=1618
Length=1618

 Score =  104 bits (56),  Expect = 6e-22
 Identities = 155/200 (78%), Gaps = 17/200 (9%)
 Strand=Plus/Plus

Query  100  CCAGTTACCTGATCATTTGATATTATA-TCACATACTTGATCATCTTCCCATAAAGG-A-  156
            ||||||||| |||| ||||   ||| | ||| || ||| |||||||||||| | ||| | 
Sbjct  220  CCAGTTACCAGATCCTTTG---TTA-ACTCAGATTCTTAATCATCTTCCCACAGAGGAAG  275

Query  157  CTTAGTTACCACAAGCGTTTTATCCACCAGATGGAGAAGTCTCTGGCTTTCGGTTCCTTG  216
            | | || |  |||||||||||||||||||||||||||| ||||||||||| ||||| |  
Sbjct  276  C-T-GTGAAGACAAGCGTTTTATCCACCAGATGGAGAACTCTCTGGCTTTGGGTTCATAA  333

Query  217  TTTGAAACTGAAATCGA-GAAAATTCTCAAACTCCATAT-C-TTTTGTGAGTTTTGGTGA  273
            |||| || ||  ||    |||  |||||||  | || || | |||| ||||||||||| |
Sbjct  334  TTTGGAATTGTCATTTTCGAAG-TTCTCAAGTTTCA-ATGCCTTTT-TGAGTTTTGGTAA  390

Query  274  CATG-TTTTTCAATTCCGAT  292
            | || |||||| ||||||||
Sbjct  391  C-TGGTTTTTCGATTCCGAT  409



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19051476871


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5