BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949957
Length=381
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53610.1 | Symbols: | Carbohydrate-binding X8 domain superf... 418 2e-116
AT5G53600.1 | Symbols: | Carbohydrate-binding X8 domain superf... 407 4e-113
> AT5G53610.1 | Symbols: | Carbohydrate-binding X8 domain superfamily
protein | chr5:21779061-21779393 FORWARD LENGTH=333
Length=333
Score = 418 bits (226), Expect = 2e-116
Identities = 298/331 (90%), Gaps = 12/331 (4%)
Strand=Plus/Plus
Query 21 ATGTCTTCACAACTTTTGACGCTCCTCTTTCT-CTTATCTGCTGCTGTGATCTACCACAT 79
||||||| |||| ||||||||||| ||||||| ||| ||||||||||||||||| |||||
Sbjct 1 ATGTCTTTACAATTTTTGACGCTCATCTTTCTCCTT-TCTGCTGCTGTGATCTATCACAT 59
Query 80 CCCCGTCGTGACTTGTAGAA-CATGGTGCTCGGCGATGCCTTCTTCCACAGCTGAGCAGT 138
||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 60 CCCCGTCGTGACTTG-CGAACCATGGTGCTCGGCGATGCCTTCTTCCACACCTGAGCAGT 118
Query 139 TACAATCCAACATT-AACTTTGCTTGCAATCATGTGGATTGTTCACCGATCCAACCCGGT 197
||||| |||||||| | | ||||||||| || |||||||||| |||||||||||||||||
Sbjct 119 TACAAGCCAACATTCAGC-TTGCTTGCAGTCGTGTGGATTGTACACCGATCCAACCCGGT 177
Query 198 GGATTTTGCTATTACCCTAATACTTTACTAGAGCATGCTTCGTTTGTCATGAAC-CTTTA 256
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
Sbjct 178 GGATTTTGCTATTACCCTAATACTTTACTAGACCATGCTTCGTTTGTCATGAACTCTT-A 236
Query 257 CTACACA-AGTCAAGACCGCA-TTGCTTCTGCTTGTAGCTTTGGCAATACTGGTTACATT 314
||||| | ||||||| |||| || | ||||||||||||| ||||||||||||||| ||
Sbjct 237 CTACA-AGAGTCAAGGTCGCACTTA-TGCTGCTTGTAGCTTCGGCAATACTGGTTACCTT 294
Query 315 AGCTATTCCGACCCAAGTGCTGGCACATGTG 345
| ||||||||||||||| ||||||||||||
Sbjct 295 ATTTATTCCGACCCAAGTACTGGCACATGTG 325
> AT5G53600.1 | Symbols: | Carbohydrate-binding X8 domain superfamily
protein | chr5:21777107-21777442 FORWARD LENGTH=336
Length=336
Score = 407 bits (220), Expect = 4e-113
Identities = 296/331 (89%), Gaps = 11/331 (3%)
Strand=Plus/Plus
Query 21 ATGTCTTCACAACTTTTGACGCTCCTCTTTCTCTTATCTGCTGCTGTGATCTACCACATC 80
||||||| | ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1 ATGTCTTTAAAACTTTTGACGTTCCTCTTTCTCCTATCTGCTGCTGTGATCTACCACATT 60
Query 81 CCCGTCGTGACTT---GTAGAACATGGTGCTCGGCGATGCCTTCTTCCACAGCTGAGCAG 137
||||||||||||| | |||||||||||| ||||||||||| |||||||| ||||||||
Sbjct 61 CCCGTCGTGACTTGCAGAAGAACATGGTGCACGGCGATGCCTACTTCCACAACTGAGCAG 120
Query 138 TTACAATCCAACATTAACTTTGCTTGCAATCATGTGGATTGTTCACCGATCCAACCCGGT 197
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 121 TTACAATCCAACATTAACTTTGCTTGCAATCATGTGGATTGTGCACCGATCCAACCCGGT 180
Query 198 GGATTTTGCTATTACCCTAATACTTTACTAGAGCATGCTTCGTTTGTCATGAACCTT-TA 256
|||||||||||||||||||||||||||||||| |||||| |||||| ||||| || ||
Sbjct 181 GGATTTTGCTATTACCCTAATACTTTACTAGACCATGCTGCGTTTGCCATGA-CCAGATA 239
Query 257 CTACACAAGTCAAGA-C-CGCAT-TGCTTCTGCTTGTAGCTTTGGCAATACTGGTTACAT 313
||||| ||||||| | | ||| |||| ||||||||||| |||||||||||||||||
Sbjct 240 CTACAGGAGTCAAGGTCACACATATGCT---GCTTGTAGCTTCGGCAATACTGGTTACAT 296
Query 314 TAGCTATTCCGACCCAAGTGCTGGCACATGT 344
|| | |||||||||||||| ||||||||||
Sbjct 297 TATATCTTCCGACCCAAGTGTTGGCACATGT 327
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17945586393
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5