BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949958
Length=374
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53610.1 | Symbols: | Carbohydrate-binding X8 domain superf... 510 3e-144
AT5G53600.1 | Symbols: | Carbohydrate-binding X8 domain superf... 446 9e-125
> AT5G53610.1 | Symbols: | Carbohydrate-binding X8 domain superfamily
protein | chr5:21779061-21779393 FORWARD LENGTH=333
Length=333
Score = 510 bits (276), Expect = 3e-144
Identities = 315/334 (94%), Gaps = 2/334 (1%)
Strand=Plus/Plus
Query 22 ATGTCTTCACAACTTTTGACGCTCCTCTTTCTCCTATGTGCTGCTGTGATCTACCACATT 81
||||||| |||| ||||||||||| |||||||||| | ||||||||||||||| |||||
Sbjct 1 ATGTCTTTACAATTTTTGACGCTCATCTTTCTCCTTTCTGCTGCTGTGATCTATCACATC 60
Query 82 CCCGTCGTGACTTGCGAACCATGGTGCTCGGCGATGCCTTCTTCCACAGCTGAGCAGTTA 141
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 CCCGTCGTGACTTGCGAACCATGGTGCTCGGCGATGCCTTCTTCCACACCTGAGCAGTTA 120
Query 142 CAATTCAACATT-AACTTTGCTTGCAGACATGTGGATTGTGCACCGATCCAACCCGGTGG 200
||| ||||||| | | |||||||||| | |||||||||| |||||||||||||||||||
Sbjct 121 CAAGCCAACATTCAGC-TTGCTTGCAGTCGTGTGGATTGTACACCGATCCAACCCGGTGG 179
Query 201 ATTTTGCTATTACCCTAATACTTTACTAGACCATGCTTCGTTTGTCATGAACTCTTACTA 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ATTTTGCTATTACCCTAATACTTTACTAGACCATGCTTCGTTTGTCATGAACTCTTACTA 239
Query 261 CCAGAGTCAAGGTCGCACTTATGCTGCTTGTAGCTTCGGCAATACTGGTTACCTTATTTA 320
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CAAGAGTCAAGGTCGCACTTATGCTGCTTGTAGCTTCGGCAATACTGGTTACCTTATTTA 299
Query 321 TTCCGACCCAAGTTCTGGCACATGTGTATTTTAA 354
||||||||||||| |||||||||||| |||||||
Sbjct 300 TTCCGACCCAAGTACTGGCACATGTGAATTTTAA 333
> AT5G53600.1 | Symbols: | Carbohydrate-binding X8 domain superfamily
protein | chr5:21777107-21777442 FORWARD LENGTH=336
Length=336
Score = 446 bits (241), Expect = 9e-125
Identities = 308/339 (91%), Gaps = 9/339 (3%)
Strand=Plus/Plus
Query 22 ATGTCTTCACAACTTTTGACGCTCCTCTTTCTCCTATGTGCTGCTGTGATCTACCACATT 81
||||||| | ||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 1 ATGTCTTTAAAACTTTTGACGTTCCTCTTTCTCCTATCTGCTGCTGTGATCTACCACATT 60
Query 82 CCCGTCGTGACTTGC-G-A-ACCATGGTGCTCGGCGATGCCTTCTTCCACAGCTGAGCAG 138
||||||||||||||| | | | |||||||| ||||||||||| |||||||| ||||||||
Sbjct 61 CCCGTCGTGACTTGCAGAAGAACATGGTGCACGGCGATGCCTACTTCCACAACTGAGCAG 120
Query 139 TTACAATTCAACATTAACTTTGCTTGCAGA-CATGTGGATTGTGCACCGATCCAACCCGG 197
||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 121 TTACAATCCAACATTAACTTTGCTTGCA-ATCATGTGGATTGTGCACCGATCCAACCCGG 179
Query 198 TGGATTTTGCTATTACCCTAATACTTTACTAGACCATGCTTCGTTTGTCATGAACTCTTA 257
|||||||||||||||||||||||||||||||||||||||| |||||| ||||| | ||
Sbjct 180 TGGATTTTGCTATTACCCTAATACTTTACTAGACCATGCTGCGTTTGCCATGACCAGATA 239
Query 258 CTACCAG-AGTCAAGGTCGCACTTATGCTGCTTGTAGCTTCGGCAATACTGGTTACCTTA 316
|||| || |||||||||| ||| ||||||||||||||||||||||||||||||||| |||
Sbjct 240 CTAC-AGGAGTCAAGGTCACACATATGCTGCTTGTAGCTTCGGCAATACTGGTTACATTA 298
Query 317 TTTATTCCGACCCAAGT-TCTGGCACATGTGTATTTTAA 354
| | ||||||||||||| | |||||||||| | ||||||
Sbjct 299 TATCTTCCGACCCAAGTGT-TGGCACATGTATCTTTTAA 336
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17593712150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5