BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949959

Length=768
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G30849.1 | Symbols:  | unknown protein; LOCATED IN: endomemb...   124    1e-27


> AT3G30849.1 | Symbols:  | unknown protein; LOCATED IN: endomembrane 
system; Has 30201 Blast hits to 17322 proteins in 780 
species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi 
- 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 
(source: NCBI BLink). | chr3:12629618-12629719 FORWARD LENGTH=102
Length=102

 Score =  124 bits (67),  Expect = 1e-27
 Identities = 94/106 (89%), Gaps = 6/106 (6%)
 Strand=Plus/Plus

Query  23   ATGTCTCTCATGAATG-CTCCTAATCAAAATCTAGCTACCTATGTTGCATTTGATGATTT  81
            |||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||
Sbjct  1    ATGTCTCTCATGAATGCCT-CTAATCTAAATCTAGCTACCTATGTTGCATTTGATGATTT  59

Query  82   ACAACTTGGAATTCATGCTCAACATGTTGTTG-CTCGTATTGTTAG  126
             |||||||||| ||| || ||||  ||| ||| || ||||||||||
Sbjct  60   GCAACTTGGAACTCACGCCCAAC--GTTATTGGCT-GTATTGTTAG  102



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 37323971221


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5