BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949962

Length=315
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G11830.1 | Symbols:  | TCP-1/cpn60 chaperonin family protein...   237    5e-62


> AT3G11830.1 | Symbols:  | TCP-1/cpn60 chaperonin family protein 
| chr3:3732661-3736374 FORWARD LENGTH=1965
Length=1965

 Score =  237 bits (128),  Expect = 5e-62
 Identities = 136/140 (97%), Gaps = 0/140 (0%)
 Strand=Plus/Plus

Query  57    AGAGCTGTGAAGAACTCAACTGTTGTTCCTAGAGGTGGAGCTATAGATATGGAGATAAGC  116
             |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  1274  AGAGCTGTGAAGAACTCAACTGTTGTTCCTGGAGGTGGAGCTATAGATATGGAGATAAGC  1333

Query  117   AAGTACCTGAGGCAGCATTCAAGAACTATTGCTTGGAAGTCACAGCTTTTCATCAACTCT  176
             |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct  1334  AAGTACCTGAGGCAGCATTCAAGAACAATTGCTGGGAAGTCACAGCTTTTCATCAACTCT  1393

Query  177   TATGCGAAGGCTCTGGAGGT  196
             |||||||||||||| |||||
Sbjct  1394  TATGCGAAGGCTCTAGAGGT  1413



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14627914959


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5