BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949967
Length=460
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51370.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 296 1e-79
AT2G05115.1 | Symbols: | pseudogene, hypothetical protein | ch... 206 2e-52
> AT1G51370.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr1:19045212-19047453 FORWARD LENGTH=1707
Length=1707
Score = 296 bits (160), Expect = 1e-79
Identities = 327/404 (81%), Gaps = 25/404 (6%)
Strand=Plus/Plus
Query 14 GTCTGAAGATCATGCATTTAGAAAATGTTA-CTTCTCCCAATGAGACTACGTTGCAGAAA 72
||||||||||||||||||| |||||||||| | | |||||||||||| ||||||||||||
Sbjct 569 GTCTGAAGATCATGCATTTTGAAAATGTTAGC-TATCCCAATGAGACCACGTTGCAGAAA 627
Query 73 CTTATCTCAGGCTCTCCAGTTCTGGAAGATTTAAAACT-TATAAG-A-TGTTCGTATCAG 129
||||||||||||||||||||||| ||||| |||| ||| | | || | | | |||||
Sbjct 628 CTTATCTCAGGCTCTCCAGTTCTAGAAGAATTAATACTCT-TCAGCACTAT--GTATCCT 684
Query 130 AAGGCAA---T---ACAAGTT-CGCTCTCATACGCTAAAGAGAATCGACATTGATGAGAG 182
|||| || | |||| || |||||| |||||||||||||| |||| || |||||
Sbjct 685 AAGGGAAACGTTTTACAA-TTGCGCTCTGATACGCTAAAGAGACTCGATATCAATGAGTT 743
Query 183 AACTAAAGTTGTGATTGATGCACCTTTACTCCAGTGTCTGTTGACTGAGATGTTCTTAAC 242
| | | ||||||||| |||||||| |||||||||||||| | || |||||| || |||
Sbjct 744 TATTGACGTTGTGATTTATGCACCTCTACTCCAGTGTCTGAGGGCTAAGATGTACTCAAC 803
Query 243 AAAAAACTATCAGATCGTCAATTCAGGTTTCCCTGCCAAACTAGATATTGATATGCGATC 302
||| |||| ||||||| ||| ||| ||||||||||||||||||||||||||| | || ||
Sbjct 804 AAAGAACTTTCAGATCATCAGTTCGGGTTTCCCTGCCAAACTAGATATTGATTT-CG-TC 861
Query 303 AATGCACCTC-TACCCCAGACCCAATGAAGGC-GTGATTCGG-GATATCCTCACCGATAT 359
||| || | | | ||| || || |||||| | |||||||||| ||||||
Sbjct 862 AAT--AC-TGGTGGGAGATACCAAAAAAAAAAAGTGATT-GAAGATATCCTCATCGATAT 917
Query 360 TTCGAGGGTCAGGGATCTAGTTATTAGTAGGAATACTTGGAAGG 403
|||||||||||||||||||||||||||||| |||||||||||||
Sbjct 918 TTCGAGGGTCAGGGATCTAGTTATTAGTAGTAATACTTGGAAGG 961
> AT2G05115.1 | Symbols: | pseudogene, hypothetical protein |
chr2:1834466-1835922 REVERSE LENGTH=1457
Length=1457
Score = 206 bits (111), Expect = 2e-52
Identities = 359/471 (76%), Gaps = 47/471 (10%)
Strand=Plus/Plus
Query 14 GTCTGAAGATCATGCATTTA-GAAAATGTTA-CTTCTCCCAATGAGACTACGTTGCAGAA 71
|||| ||||||||||||||| | | || ||| | | ||||| |||| |||||||||||
Sbjct 449 GTCTAAAGATCATGCATTTACG-ATATATTAGATAC-CCCAACAAGACCACGTTGCAGAA 506
Query 72 ACTTATCTCAGGCTCTCCAGTTCTGGAAGATTTAAAACTTA-TAAGATGTTCGTATCA-G 129
||||||||||||||||||| ||||| ||||||||| | | | |||| |||| || | |
Sbjct 507 ACTTATCTCAGGCTCTCCACTTCTGAAAGATTTAAC-CATCCTCAGATCTTCGAATGATG 565
Query 130 A-AGG-CAA-T-----ACAAGTTCGCTCTCATACGCTAAAGAGAATCGACATTGATGAGA 181
| | | ||| | |||||| ||||||| ||| ||||||||| || |||| ||||||
Sbjct 566 ATAAGACAAATGTTTTACAAGTGCGCTCTCGTACTCTAAAGAGAGTCTACATCGATGAGT 625
Query 182 GAACTAAAGTTGTGATTGATGCACCTTTACTCCAGTGTCTGTTGACTGAGATGT-TCTTA 240
|||||||||||||| |||||||| ||||||||||| || | || | |||| ||||
Sbjct 626 ---CTAAAGTTGTGATTTATGCACCTCTACTCCAGTGTTTGAGGGCT-A-ATGTCTCTTT 680
Query 241 ACAAAA-AACTATCAGATCGTCAATTCAGGTTTCC-CTGCCAAACTAGATATTGATATGC 298
|| ||| |||| ||||||| |||||| |||| || |||||||||||||||||| | | |
Sbjct 681 ACCAAAGAACTTTCAGATCATCAATTTGGGTT-CCTCTGCCAAACTAGATATTGGTTT-C 738
Query 299 GATCAAT-GCACCT-CTACCCCAGACCCAATGAAGGCGTGATTCGGGATATCCTCACCGA 356
|| ||| || | | | || | || ||| || || |||| || || |||| |||
Sbjct 739 TAT-AATAGC-CATGCGAC---ATAC--AAT-AACACG--ATTCCTGACATTCTCAGCGA 788
Query 357 TATTTCGAGGGTCAGGGATCTAGTTATTAGTAG-GAATACTTGGAAGGTATACATCTCAA 415
|| || ||||| | ||| ||||||||||||| || || |||||||||||||| |||||
Sbjct 789 CATATCCAGGGTTAAGGAGCTAGTTATTAGTAATGA-TATTTGGAAGGTATACACCTCAA 847
Query 416 CATTT-GAGC--ATATTTAT-T-TAT-AAGTATTCCTCCACAAAAGTTTCT 460
|||| | || |||| ||| | ||| || |||| | ||||||||||||
Sbjct 848 -ATTTTGTGCTGATATGTATATATATGAA-TATTGTTTTACAAAAGTTTCT 896
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21916738564
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5