BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949968
Length=1913
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53640.1 | Symbols: | CONTAINS InterPro DOMAIN/s: F-box dom... 815 0.0
AT3G23955.2 | Symbols: | F-box family protein | chr3:8655023-8... 183 4e-45
> AT5G53640.1 | Symbols: | CONTAINS InterPro DOMAIN/s: F-box domain,
cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596),
FBD-like (InterPro:IPR006566), F-box domain, Skp2-like
(InterPro:IPR022364), Leucine-rich repeat 2 (InterPro:IPR013101);
BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like
domains-containing protein (TAIR:AT5G53635.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:21788311-21790690 REVERSE LENGTH=1554
Length=1554
Score = 815 bits (441), Expect = 0.0
Identities = 538/586 (92%), Gaps = 2/586 (0%)
Strand=Plus/Plus
Query 42 CTTGTTCCAAAGGATTGAGTCAGAGGTTGAAGGAAGATAGAATAAGCCCATT-AACTGAA 100
||||||| ||||| |||| |||||||||||||||||| |||||||||| ||| | ||||
Sbjct 29 CTTGTTCAAAAGGGTTGAATCAGAGGTTGAAGGAAGACAGAATAAGCCAATTCTA-TGAA 87
Query 101 TCTTTGTTATGTCACATACTTAATTATCTTCCGACAAAGGATGTTGTTAAGACAAGCGTT 160
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 88 TCTTTGTTATGTCAAATACTTAATTATCTTCCTACAAAGGATGTTGTTAAGACAAGCGTT 147
Query 161 TTATCCACCAGATGGAGAAGTCTTTGGCTCTCGGTTCCTCGTTTGGAATTGGATTCTAGA 220
|||||||| |||||||||||||| ||||| | ||||||| |||||||||||||||| ||
Sbjct 148 TTATCCACAAGATGGAGAAGTCTCTGGCTTTTGGTTCCTAGTTTGGAATTGGATTCCCGA 207
Query 221 GATTTCTCTGATTTCAATGCCTTTGTGAGTTTTTGTGATAGGTATTTCGATTCCAATAGG 280
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 208 GATTTCTCTGATTTCAATACCTTTGTGAGTTTTTGTGATAGGTATTTCGATTCCAATAGG 267
Query 281 GTTTTATGCATAAACAAGCTCAAGTTAACTATTGGTGACAATGAAGAAGATGGCTTTTAT 340
||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 268 GTTCTATGCATAAACAAGCTCAAGTTAACTATTAGTGAAAATGAAGAAGATGGCTTTTAT 327
Query 341 CTCAAGTCATGGATTGATGCTGCAGCTAAGCGTAAGCTCCAACATCTAAATGTTCATTTT 400
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||
Sbjct 328 CTCAAGTCATGGATTGATGCTGCAGCTAAGCGTAAGATCCAACATCTAGATGTTCAGTTT 387
Query 401 CTGCCTCAGTTTCATAAGATTCCTCTAAACCTTTATAAATGTGAGACACTCGTATACTTA 460
|||||||||||||||||||||| | | || ||||||||||||||| |||| || | ||||
Sbjct 388 CTGCCTCAGTTTCATAAGATTCATTTTAATCTTTATAAATGTGAGGCACTGGTTTCCTTA 447
Query 461 AGCCTCGTTGAGGTAACCTTGGCTAAAGGCAGAATCGTCTCTTTCCCTTGTATGAAGACT 520
|| ||| ||||||| |||||| ||||||||| ||| |||||||||||||||||||||||
Sbjct 448 AGACTCTTTGAGGTGTCCTTGGATAAAGGCAGGATCTTCTCTTTCCCTTGTATGAAGACT 507
Query 521 ATGCATTTAGAAGATAACGTGTATCCCAATGAAGCCACTTTCAAGAAACTTATCTCTTGT 580
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 508 ATGCATTTAGAAGATAACGTGTATCCCAATGAAGCCACTTTTAAGGAACTTATCTCTTGC 567
Query 581 TGCCCTGTCTTGGAAGACTTGACGGTTATTATATATGGCAAGGATA 626
||||||||||||||||| || |||||||| || ||||| | |||||
Sbjct 568 TGCCCTGTCTTGGAAGATTTAACGGTTATCATTTATGGGATGGATA 613
Score = 584 bits (316), Expect = 9e-166
Identities = 414/461 (90%), Gaps = 7/461 (2%)
Strand=Plus/Plus
Query 1307 GATGCCAAGTTTGTCTCTTTCCCTTGTATGAAGACTATGCATTTAGAAGATAATGTGTAT 1366
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 643 GATGCCAAGTTTGTCTCTTTCCCTTGTATGAAGACTATGCATTTAGAAGATAATATGTAT 702
Query 1367 CCCAATGAAGCCACTTTCAAGAAGCTTATCTCTTGTTGCCCTGTCTTGGAAGACTTGACG 1426
||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct 703 CCCAATGAATCCACTTTCAAGAAACTTATCTCTTGCTGCCCTGTCTTGGAAGACTTAACG 762
Query 1427 GTTATTATATATGGGAAGGATACTAAA-TCCTTTCCGGTGCACTCTCGGTCACTAAAGAG 1485
||||| || ||||||| ||||| ||| || |||| ||||||||||| ||||||||||||
Sbjct 763 GTTATCATTTATGGGATGGATAGAAAAGTC-TTTCGGGTGCACTCTCAGTCACTAAAGAG 821
Query 1486 GCTCACTTTAGTACGGGTTTCTTCTTTCCAC--TCCGGT-GCTATTTCGGGAGTTGTGAT 1542
| ||| |||| ||| || |||||||||| | | ||| ||| ||||||||||||||||
Sbjct 822 GTTCAGTTTAAAACGAGTCTCTTCTTTCCTCCATGAGGTTGCTCTTTCGGGAGTTGTGAT 881
Query 1543 CAATGCTCCTCGACTATGCTCTTTGAGGATTAAGGATAACGTATCGAAAAGCTTCATAGT 1602
||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 882 TGATGCTCCTCTACTATGCTCTTTGAGGATTAACGATAATGTATCGAAAAGCTTCATAGT 941
Query 1603 AAAAAATATAGGTTCTAATGCCAAGTTAGATCTTTCTATCCTCTTTGGTTTGTGGTATTT 1662
||| ||| | |||||||||| |||||||||||||||||||||||||||||| ||| ||||
Sbjct 942 AAACAATTTGGGTTCTAATGACAAGTTAGATCTTTCTATCCTCTTTGGTTTATGGCATTT 1001
Query 1663 TGATGAAGCAAGCGTTAGATCAAGGAGAAGTAGCATCCACAGATTTCTTCCAGGGATTTT 1722
||||||| ||||||||| ||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 1002 TGATGAAACAAGCGTTACATCAATGAGAAGTAGCATCGACAGATTTCTTCCAGGGATTTT 1061
Query 1723 AAGTGTTAGGGAAATGACAATACATCCGCGCA-CTTTCATG 1762
|||||||| |||||||||||||||| | | || ||||||||
Sbjct 1062 AAGTGTTATGGAAATGACAATACATTCAC-CAGCTTTCATG 1101
Score = 475 bits (257), Expect = 6e-133
Identities = 373/428 (87%), Gaps = 11/428 (3%)
Strand=Plus/Plus
Query 497 GTCTCTTTCCCTTGTATGAAGACTATGCATTTAGAAGATAACGTGTATCCCAATGAAGCC 556
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 655 GTCTCTTTCCCTTGTATGAAGACTATGCATTTAGAAGATAATATGTATCCCAATGAATCC 714
Query 557 ACTTTCAAGAAACTTATCTCTTGTTGCCCTGTCTTGGAAGACTTGACGGTTATTATATAT 616
||||||||||||||||||||||| |||||||||||||||||||| |||||||| || |||
Sbjct 715 ACTTTCAAGAAACTTATCTCTTGCTGCCCTGTCTTGGAAGACTTAACGGTTATCATTTAT 774
Query 617 GGCAAGGATACTAAA-TCCTTTCCGGTGCACTCTCGGTCACTAAAGAGGCTCACTTTAGT 675
|| | ||||| ||| || |||| ||||||||||| ||||||||||||| ||| ||||
Sbjct 775 GGGATGGATAGAAAAGTC-TTTCGGGTGCACTCTCAGTCACTAAAGAGGTTCAGTTTAAA 833
Query 676 ACGTATT-TCTTCTTTCCAC--TCCGGT-GCTATTTCGGGAGTTGTGATCAATGCTCCTC 731
||| | | |||||||||| | | ||| ||| |||||||||||||||| |||||||||
Sbjct 834 ACG-AGTCTCTTCTTTCCTCCATGAGGTTGCTCTTTCGGGAGTTGTGATTGATGCTCCTC 892
Query 732 TACTATG-TGCTTTGAGCATCAATGATAACACATCGAAAAGCTTCATAGTAAACAATATG 790
||||||| | ||||||| || || ||||| ||||||||||||||||||||||||| ||
Sbjct 893 TACTATGCT-CTTTGAGGATTAACGATAATGTATCGAAAAGCTTCATAGTAAACAATTTG 951
Query 791 GGGTCTAGTGCCAAGTTAGATCTTTCTATCCTCTTTGGTTTGTGGGATTTTGATGAAGCA 850
|| |||| || |||||||||||||||||||||||||||||| ||| ||||||||||| ||
Sbjct 952 GGTTCTAATGACAAGTTAGATCTTTCTATCCTCTTTGGTTTATGGCATTTTGATGAAACA 1011
Query 851 AGCCTTACATCAAGGAGAAGTAGCATCCACAGATTTCTCCCAGGGATTTCAAAG-GTTAA 909
||| ||||||||| ||||||||||||| |||||||||| |||||||||| || | ||||
Sbjct 1012 AGCGTTACATCAATGAGAAGTAGCATCGACAGATTTCTTCCAGGGATTTTAA-GTGTTAT 1070
Query 910 GGAACTGA 917
|||| |||
Sbjct 1071 GGAAATGA 1078
Score = 353 bits (191), Expect = 3e-96
Identities = 321/381 (84%), Gaps = 19/381 (5%)
Strand=Plus/Plus
Query 1077 TGA-AGGT-TTCCGATTCCAATAAAGCTT-TATGGATAAAAAAGCTCAAGTTAACTATTG 1133
||| |||| || |||||||||| | | || |||| ||||| ||||||||||||||||||
Sbjct 243 TGATAGGTATTTCGATTCCAAT-AGGGTTCTATGCATAAACAAGCTCAAGTTAACTATT- 300
Query 1134 A-TGAGAGTGTAGATAATGGTGCCTCTTATCTCAAGTCATGGATTGATGCTGCAGCTAAG 1192
| ||| | || | | || | || || ||||||||||||||||||||||||||||||||||
Sbjct 301 AGTGAAAATG-A-AGAA-GATGGCTTTTATCTCAAGTCATGGATTGATGCTGCAGCTAAG 357
Query 1193 CGTAAGCTCCAACATCTT-ATTGTTCA-TTCTCTGCCTCATTTTTATAAGACTCCTGAAA 1250
|||||| |||||||||| || ||||| || ||||||||| ||| |||||| || | |
Sbjct 358 CGTAAGATCCAACATCTAGAT-GTTCAGTT-TCTGCCTCAGTTTCATAAGATTCATTTTA 415
Query 1251 ACCTTTATGAATGTGAGACACTGGTCTACTTACA-ACTCTTTGAAGTGGCCTTGAATGAT 1309
| |||||| |||||||| ||||||| | |||| | ||||||||| ||| ||||| || |
Sbjct 416 ATCTTTATAAATGTGAGGCACTGGTTTCCTTA-AGACTCTTTGAGGTGTCCTTGGATAAA 474
Query 1310 GCCAAGTT-TGTCTCTTTCCCTTGTATGAAGACTATGCATTTAGAAGATAATGTGTATCC 1368
| || | | | |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 475 GGCAGGATCT-TCTCTTTCCCTTGTATGAAGACTATGCATTTAGAAGATAACGTGTATCC 533
Query 1369 CAATGAAGCCACTTTCAAG-AAGCTTATCTCTTGTTGCCCTGTCTTGGAAGACTTGACGG 1427
||||||||||||||| ||| || ||||||||||| ||||||||||||||||| || ||||
Sbjct 534 CAATGAAGCCACTTTTAAGGAA-CTTATCTCTTGCTGCCCTGTCTTGGAAGATTTAACGG 592
Query 1428 TTATTATATATGGGAAGGATA 1448
|||| || ||||||| |||||
Sbjct 593 TTATCATTTATGGGATGGATA 613
> AT3G23955.2 | Symbols: | F-box family protein | chr3:8655023-8657439
REVERSE LENGTH=1618
Length=1618
Score = 183 bits (99), Expect = 4e-45
Identities = 237/301 (79%), Gaps = 20/301 (7%)
Strand=Plus/Plus
Query 102 CTTTGTTATGTCACATACTTAATTATCTTCCGACAAAGGATGTTGTTAAGACAAGCGTTT 161
|||||||| ||| || |||||| ||||||| ||| |||| | ||| |||||||||||||
Sbjct 234 CTTTGTTAACTCAGATTCTTAATCATCTTCCCACAGAGGAAGCTGTGAAGACAAGCGTTT 293
Query 162 TATCCACCAGATGGAGAAGTCTTTGGCTCTCGGTTCCTCGTTTGGAATTGG-ATTCTAGA 220
|||||||||||||||||| ||| ||||| | ||||| | |||||||||| ||| | ||
Sbjct 294 TATCCACCAGATGGAGAACTCTCTGGCTTTGGGTTCATAATTTGGAATTGTCATTTTCGA 353
Query 221 GATTTCTCT-GATTTCAATGCCTTTGTGAGTTTTTGTGA-TAGGTATTTCGATTCCAATA 278
| ||||| | ||||||||||||| |||||||| || | | ||| |||||||||| |||
Sbjct 354 -AGTTCTCAAG-TTTCAATGCCTTTTTGAGTTTTGGTAACT-GGTTTTTCGATTCCGATA 410
Query 279 GGGTTTTATGCATAAACAAGC-TCAAGTTAACTATTGG-TG-ACAATGAAGAAGATGGCT 335
| |||| ||||||| | | || |||||||| || || | || | ||||| | | | ||
Sbjct 411 GAGTTTCATGCATAGAGA-GCCTCAAGTTATCT-TTAGATGGA-AATGATGCA--TC-CT 464
Query 336 TTTATCTCAAGTCATGGATTGATGC-TGCAGCTAAGCGTAAGCTCCAACATCTAAATGTT 394
||||||| ||||||||||||| | | |||||||||| |||||| |||| |||||
Sbjct 465 ---ATCTCAAACCATGGATTGATGCCTTT-GTTAAGCGTAAGATCCAACGTCTACATGTT 520
Query 395 C 395
|
Sbjct 521 C 521
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94728428415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5