BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949970
Length=1152
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53660.1 | Symbols: AtGRF7, GRF7 | growth-regulating factor ... 1690 0.0
AT4G24150.1 | Symbols: AtGRF8, GRF8 | growth-regulating factor ... 97.1 3e-19
> AT5G53660.1 | Symbols: AtGRF7, GRF7 | growth-regulating factor
7 | chr5:21794536-21796046 FORWARD LENGTH=1315
Length=1315
Score = 1690 bits (915), Expect = 0.0
Identities = 1077/1154 (93%), Gaps = 16/1154 (1%)
Strand=Plus/Plus
Query 1 TTTTCAAAATCTCTAACCTTCATGGACTTTCTCAAAGTTTCAGACAAGACAACAATCCCA 60
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 80 TTTTTAAAATCTCTAACCTTCATGGACTTTCTCAAAGTTTCAGACAAGACAACAATTCCA 139
Query 61 TGTAGAAGTGATTCTTTGTTTAGTTTGAATCAGCAACAATACAAAGAGTCTTCTTTTGGA 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 TATAGAAGTGATTCTTTGTTTAGTTTGAATCAGCAACAATACAAAGAGTCTTCTTTTGGA 199
Query 121 TTCAGAGACATGGAGATTCATCCTCATCCTCATCTCACTACTCCTTATTCAGGAAATGGA 180
||||||||||||||||||||||| |||||| | ||| | | | || |||||||||||
Sbjct 200 TTCAGAGACATGGAGATTCATCCGCATCCT-A-CTC-C-A-T----ATGCAGGAAATGGA 250
Query 181 GTTTTGGGTTGTTACTATTACTACCCTTTCACAAACGCACAACTGAAGGAGCTAGAGAGA 240
||||||||||||| || || ||||||||||||||||||||| |||||||||| ||||||
Sbjct 251 CTTTTGGGTTGTTATTACTATTACCCTTTCACAAACGCACAATTGAAGGAGCTTGAGAGA 310
Query 241 CAAGCAATGATCTACAAGTACATGATCGCATCTATTCCTGTTCCTTTTGATCTCCTTGTT 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 311 CAAGCAATGATCTACAAGTACATGATCGCATCTATTCCTGTTCCTTTCGATCTACTTGTT 370
Query 301 TCATCACCATCCTCTGCTTCTCCCTGTAACAATAAAAACATCGCCGGAGATTTAGAACCG 360
|| |||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||
Sbjct 371 TCTTCACCATCCTCTGCCTCTCCTTGTAACAATAAAAACATCGCCGGAGATTTAGAGCCG 430
Query 361 GGAAGATGCCGGAGAACAGACGGAAAGAAATGGAGATGCGCAAAAGAAGTCGTATCTAAT 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 431 GGAAGATGCCGGAGAACAGACGGAAAGAAATGGAGATGCGCGAAAGAAGTCGTCTCTAAT 490
Query 421 CACAAATACTGTGAGAAACACTTACACAGAGGCCGTCCTCGTTCAAGAAAGCATGTGGAA 480
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 491 CACAAATACTGTGAGAAACACTTACACAGAGGTCGTCCTCGTTCAAGAAAGCATGTGGAA 550
Query 481 CCTCCTTATTCTCGTCCTAACAACAATGGTGGTTCTGTTAAAAACAGAGATCTCAAAAAT 540
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 551 CCTCCTTATTCTCGCCCTAACAACAATGGTGGTTCTGTGAAAAACAGAGATCTCAAAAAG 610
Query 541 CTTCCTCGAAAGCTCTCTAATAGTTC-ATTTAAAGACAAAACACTTGAGACAATTGAGGT 599
||||||| |||| | |||| |||||| || |||||||||||||||||| |||| |||||
Sbjct 611 CTTCCTCAAAAGTTATCTAGTAGTTCCATC-AAAGACAAAACACTTGAGCCAATGGAGGT 669
Query 600 TTCATCATCCATCTCAAACTACAGAGAATCAAGAGGAAGTGAGGTATTTACTATATCTG- 658
||||||||| ||||||||||| ||||| || |||||||||||| ||||||| ||| ||
Sbjct 670 TTCATCATCAATCTCAAACTATAGAGACTCCAGAGGAAGTGAGAAATTTACTGTAT-TGG 728
Query 659 CGACAACAGAGCAAGAGAACAAGTATCTGAATTTTATCGATGTTTGGTCCGATGGTGTAA 718
| |||||||||||||||||||||||||||||||| || ||||| ||||||||||| ||||
Sbjct 729 CAACAACAGAGCAAGAGAACAAGTATCTGAATTTCATAGATGTATGGTCCGATGGAGTAA 788
Query 719 GATCATCTGAAAAACAGAGTACAACAACTTCAACACCTGTTTCTTCTTCTAATGGCAATC 778
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 789 GATCATCTGAAAAACAGAGTACAAC---TTCAACACCTGTTTCTTCTTCCAATGGCAATC 845
Query 779 TCTCTCTTTACTCGCTTGATCTTTCAATGGGAGGAAACAACTTAATGGGCCAAGACGAAA 838
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 846 TCTCTCTTTACTCGCTTGATCTCTCAATGGGAGGAAACAACTTAATGGGCCAAGACGAAA 905
Query 839 TGGGCTTGATACAAATGGGTTTAGGTGTAATCGGGTCGGGTCGTGAGGATCATAACGGGT 898
||||| ||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||
Sbjct 906 TGGGCCTGATACAAATGGGCTTAGGTGTAATCGGGTCGGGTAGTGAGGATCATCACGGGT 965
Query 899 ATGGTCCTTATGGTGTGACGTCTTCACTAGAGGAGATGTCAAGCTGGCTTGCTCCGATGT 958
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 966 ATGGTCCTTATGGTGTGACTTCTTCACTAGAGGAGATGTCAAGCTGGCTTGCTCCGATGT 1025
Query 959 CTACCACGCCTGGTGGACCATTAGCGGAGATACTGAGGCCGAGTCCAAATTTGGTTATCT 1018
||||||| |||||||||||||||||||||||||||||||||||| | ||||||| ||||
Sbjct 1026 CTACCACACCTGGTGGACCATTAGCGGAGATACTGAGGCCGAGTACGAATTTGGCGATCT 1085
Query 1019 CTGGTGACATTGAATCGTATAGCTTGATGGAGACTCCGACTCCAAGCTCGTCGCCGTCTA 1078
||||||| || |||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1086 CTGGTGATATCGAATCGTATAGCTTGATGGAGACTCCCACTCCAAGCTCGTCCCCGTCTA 1145
Query 1079 GAGTGGTGAAGAAGATGACTAGTTCAGTGTCCGACGAAAGCAGCCAGATTTAGGAATTAT 1138
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1146 GAGTGATGAAGAAGATGACTAGTTCAGTGTCCGACGAAAGCAGCCAGGTTTAGGAGTTAT 1205
Query 1139 GGAGTTTGGTAATA 1152
||||||||||||||
Sbjct 1206 GGAGTTTGGTAATA 1219
> AT4G24150.1 | Symbols: AtGRF8, GRF8 | growth-regulating factor
8 | chr4:12535972-12539387 FORWARD LENGTH=1482
Length=1482
Score = 97.1 bits (52), Expect = 3e-19
Identities = 94/113 (83%), Gaps = 8/113 (7%)
Strand=Plus/Plus
Query 372 GAGAACAGACGGAAAGAAATGGAGATGCGCAAAAGAAGTCGT-A-T-CTAATCACAAATA 428
||||||||| || ||||||||||| ||| | |||| ||| | | || |||| |||||
Sbjct 750 GAGAACAGATGGGAAGAAATGGAGGTGCTC--TAGAA-ACGTGATTCCTGATCAGAAATA 806
Query 429 CTGTGAGAAACACTTACAC-AGAGGCCGTCCTCGTTCAAGAAAGCATGTGGAA 480
|||||||| |||| |||| ||| |||||||||||||||||||||||||||||
Sbjct 807 CTGTGAGAGACACACACACAAGA-GCCGTCCTCGTTCAAGAAAGCATGTGGAA 858
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56525813670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5