BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg949979

Length=272
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G53450.1 | Symbols:  | Putative lysine decarboxylase family ...   174    3e-43
  AT2G37210.2 | Symbols:  | lysine decarboxylase family protein |...   152    1e-36
  AT4G21430.1 | Symbols: B160 | Zinc finger, RING-type;Transcript...  99.0    2e-20


> AT3G53450.1 | Symbols:  | Putative lysine decarboxylase family 
protein | chr3:19812977-19815430 REVERSE LENGTH=648
Length=648

 Score =  174 bits (94),  Expect = 3e-43
 Identities = 96/97 (99%), Gaps = 0/97 (0%)
 Strand=Plus/Plus

Query  62   GGTTTTAAGGAACATTGATCTAGTCTATGGAGGTGGAAGCATAGGTTTGATGGGTTTGGT  121
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  123  GGTTTTAAGGAACATTGATCTAGTCTATGGAGGTGGAAGCATAGGTTTGATGGGTTTGGT  182

Query  122  TTCACAAGCTGTTCATGATGGTGGTCGCCATGTTATT  158
            ||| |||||||||||||||||||||||||||||||||
Sbjct  183  TTCGCAAGCTGTTCATGATGGTGGTCGCCATGTTATT  219


> AT2G37210.2 | Symbols:  | lysine decarboxylase family protein 
| chr2:15623991-15626938 REVERSE LENGTH=1086
Length=1086

 Score =  152 bits (82),  Expect = 1e-36
 Identities = 92/97 (95%), Gaps = 0/97 (0%)
 Strand=Plus/Plus

Query  62   GGTTTTAAGGAACATTGATCTAGTCTATGGAGGTGGAAGCATAGGTTTGATGGGTTTGGT  121
            ||||| |||||| ||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct  227  GGTTTCAAGGAATATTGATCTAGTCTATGGAGGTGGGAGCATAGGATTGATGGGTTTGGT  286

Query  122  TTCACAAGCTGTTCATGATGGTGGTCGCCATGTTATT  158
            ||||||||||||||||||||||||||| |||||||||
Sbjct  287  TTCACAAGCTGTTCATGATGGTGGTCGTCATGTTATT  323


> AT4G21430.1 | Symbols: B160 | Zinc finger, RING-type;Transcription 
factor jumonji/aspartyl beta-hydroxylase | chr4:11407804-11412159 
REVERSE LENGTH=2815
Length=2815

 Score = 99.0 bits (53),  Expect = 2e-20
 Identities = 61/65 (94%), Gaps = 0/65 (0%)
 Strand=Plus/Plus

Query  160   GGTTTTTGAGAGGAAAGGCCGAGACTAACACTTATCAAGAAAGGCTGAAGCTGGAGGGAT  219
             ||| ||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||
Sbjct  1712  GGTCTTTGAGAGGAAAGGCTGAGACTAATACTTGTCAAGAAAGGCTGAAGCTGGAGGGAT  1771

Query  220   GGCTT  224
             |||||
Sbjct  1772  GGCTT  1776



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12466401752


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5