BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949983
Length=1313
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53780.1 | Symbols: | Protein of unknown function (DUF295) ... 1592 0.0
> AT5G53780.1 | Symbols: | Protein of unknown function (DUF295)
| chr5:21839818-21841977 REVERSE LENGTH=1131
Length=1131
Score = 1592 bits (862), Expect = 0.0
Identities = 1015/1087 (93%), Gaps = 17/1087 (2%)
Strand=Plus/Plus
Query 215 TCTAGTTCCTTCCACAAACAATCACAGGTT---GAAGAAGAAAGTGATCACAAGGATGCT 271
|||| |||||||||| |||||||||||||| |||||||||||||||||||||| ||||
Sbjct 52 TCTAATTCCTTCCACGAACAATCACAGGTTGAAGAAGAAGAAAGTGATCACAAGGCTGCT 111
Query 272 CGTTTCTTCTCTTCATCTCCAAAGAAGCAAACTCCATATATGGTACTTGAAGGTGATAAA 331
||||||||||| |||||||| | ||||||||||| ||||||||||||| ||||||||||
Sbjct 112 CGTTTCTTCTCCTCATCTCC--A-AAGCAAACTCCGTATATGGTACTTGTAGGTGATAAA 168
Query 332 GTAGGAGAGTCTTCTGAAGCTGAAAATATCATAATGAGTTTCAAGTTGTTTGATCTAAGT 391
|||||||||||| | ||||||||||| ||||| ||||||||||||||||||||||| |||
Sbjct 169 GTAGGAGAGTCTCCAGAAGCTGAAAACATCATCATGAGTTTCAAGTTGTTTGATCTGAGT 228
Query 392 AAGGAAGAGATCATCCAAGTTATCCACAAGTCATTTCCGAAGTTGTTGTACGAAGAGTCA 451
||||||||||||||| |||||||||||||||||||||| |||||||||||| |||| |||
Sbjct 229 AAGGAAGAGATCATCGAAGTTATCCACAAGTCATTTCCAAAGTTGTTGTACCAAGATTCA 288
Query 452 AGAGTCATTGGAAGCTCGCGTGGCTGGATAGCTTTTATGAGCAAACATGATGGAACCGTA 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 AGAGTCATTGGAAGCTCGCGTGGCTGGATAGCTTTTATGAGCAAACATGATGGAACCGTA 348
Query 512 CATCTAAGTGACGTGTTCAATCTCGGGTCCCTTAGAGTCATTACTCTGCCTCCTCTTCCT 571
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 CATCTAAGCGACGTGTTCAATCTCGGGTCCCTTAGAGTCATTACTCTGCCTCCTCTTCCT 408
Query 572 GATCCTATGTATCATCCTTCCACAGCCATCATAAATGTCTCCTTATCCTATCCGCCAGAC 631
|||||||||||| ||||||||| || ||||||||||||||||||||||||||| ||||||
Sbjct 409 GATCCTATGTATGATCCTTCCAGAGTCATCATAAATGTCTCCTTATCCTATCCCCCAGAC 468
Query 632 CAAGAAGATGATTATGCAATGTACATCAAGTTCTTATGCTCCGAAATATAT-TACTGTAG 690
|||||||| ||||||| | ||||||||||||||||||||||||| |||||| | ||||||
Sbjct 469 CAAGAAGACGATTATGTAGTGTACATCAAGTTCTTATGCTCCGATATATATCT-CTGTAG 527
Query 691 GCCTAATCACCACTCGCAATGGGTTCTATGTGATAGTAACGAAATCCACACAACCGCCTC 750
||||||||||||||||||||||||| ||| ||| ||||||| |||||||| || |||||
Sbjct 528 GCCTAATCACCACTCGCAATGGGTTGGATGCGATGGTAACGAGATCCACACGACGGCCTC 587
Query 751 TGATATCGTATATTCCCCAAGAAACCAAATGTTATTCCTCGTGATAATGGGAGCAAGTTT 810
||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 588 TGATATCGTTTATTCCCCAAGAAACCAGATGTTGTTCCTCGTGATAATGGGAGCAAGTTT 647
Query 811 CTTGCT-TTCTTTTGATCTCAACATGAACAGAAAGTATACGAGGTTGCATTTGAGAAATA 869
|||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 648 CTTG-TGTTCTTTTGATCTCAACATGAACAAAAAGTATACGAGGTTGCATTTGAGAAATA 706
Query 870 TCCCAAAGATGCCACAGTCCGAGTGGGAGTTGTTGGCTATGTGTATCAAGAGAGAGCACT 929
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 707 TCCCAATGATGCCACAGTCCGAGTGGGAGTTGTTGGCTATGTGTATCAAGATAGAGCACT 766
Query 930 TGGTTGAGTCCCCTGGTGGCAGAATTTTTGTTGTTAAG---TATGTGGAGACATACGACC 986
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 767 TGGTTGAGTCCCCCGGTGGCAGAATTTTTGTTGTTAAGCAGTATGTGGAGACATACGACC 826
Query 987 AAGGGGACAAGGATATTATATTCAACAAAACCAAGAGATTCATGGTGTTTAAGCTAAATA 1046
|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 AAGGAGACAAGGAGGTTATATTCAACAAAACCAAGAGATTCATGGTGTTTAAGCTAAATA 886
Query 1047 CAAAAGCAAAGGATGGAGAAATCGCCGCTTTTTACACTAAAGACATTGGAGATCTCTGCA 1106
||||||||| ||||||||| || ||||||| ||||||| |||||||||||||||||||||
Sbjct 887 CAAAAGCAACGGATGGAGAGATTGCCGCTTATTACACTGAAGACATTGGAGATCTCTGCA 946
Query 1107 TTTTCTTTGGCAACAATGAGACATTATGTCTTGAGGCAAGCAAATA-TCATGGACTTAAG 1165
||||||||||||||||||||||||||||||||||||||||||| || || |||||| |||
Sbjct 947 TTTTCTTTGGCAACAATGAGACATTATGTCTTGAGGCAAGCAA-TAATCCTGGACTGAAG 1005
Query 1166 CCTAACTATATATATTACGTTGGATATGGCCTCGGTGTTTACGACATCG-GTTCCCAAAT 1224
|||||||||||||||||| ||||||||||||| ||| |||||||||| | |||||||||
Sbjct 1006 CCTAACTATATATATTACATTGGATATGGCCTTGGTTTTTACGACAT-GAGTTCCCAAAA 1064
Query 1225 ATTACACCACTTTACATCATCTATGCCTCTAAATTGGCCTCTTTATCTCGTACCCAGTCT 1284
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1065 AGTACACCACTTTACATCATCTATGCCTCTAAATTGGCCTCTTTATCTCCTACCCGGTCT 1124
Query 1285 TATCTAA 1291
|||||||
Sbjct 1125 TATCTAA 1131
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64608101415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5