BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949989
Length=1079
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53790.1 | Symbols: | Protein of unknown function (DUF295) ... 900 0.0
> AT5G53790.1 | Symbols: | Protein of unknown function (DUF295)
| chr5:21843501-21845261 FORWARD LENGTH=1143
Length=1143
Score = 900 bits (487), Expect = 0.0
Identities = 577/620 (93%), Gaps = 7/620 (1%)
Strand=Plus/Plus
Query 339 GTTAGTGTCACCTTCTTTAGATCTAAACTTTATTACTGTATGCCTAATCGAGATTCAGAG 398
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 433 GTTAGTGTCAGCTTCTTTAGATCTAAACTTTATTATTGTATGCCTAATCGAGATTCAGAG 492
Query 399 TGGACTAGTATTAACATTCCATTTTCTTGCGATTTCGACTCACAAGTCGTTTATTCTCGG 458
|||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 493 TGGACTAGTACTAACATTCCATTTTCTTGCGATTTCAACTCACAAGTCGTTTACTCTCGA 552
Query 459 AAA-GACCAAATGTTTTATCTCCTCACTACTGGATGTCCCTATATAGCTGCCTTGGATCT 517
||| | |||||||||||| |||||||| ||||||||| ||||||||||||||||||||||
Sbjct 553 AAACG-CCAAATGTTTTACCTCCTCACAACTGGATGTGCCTATATAGCTGCCTTGGATCT 611
Query 518 CAAAAACAATAAGGACCCTACCTTCCTTCAAATACAGTTTCAGAACTTCCCTTTGGTACC 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 612 CAAAAACAATAAGGACCCTACCTTCCTTCAAATACAGTTTCAGAACTTCCCTTTGATACC 671
Query 578 ACAACACGAGTGGGAGATATTGGCTTCATGTTCACGGAGTGACTATATTGCTGAGTCGTC 637
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 672 ACAACACGAGTGGGAGATATTGGCTTCATGTTTACGGAGTGACTATATTGCTGAGTCGTC 731
Query 638 TTCTGGCGAACGTTTCATTGTTCAATGGTATTTGACGTATGTGGAGT--C-ATGGGGCAA 694
|||||||||||||||||||||||||||||||||||||||||||| | | |||||||||
Sbjct 732 TTCTGGCGAACGTTTCATTGTTCAATGGTATTTGACGTATGTGGTGGAACCATGGGGCAA 791
Query 695 TGGGAACATAACTAAAGTACTTAGAAAAACCAAGCAG-TTCATGGTGTTCAGGGAAGAAG 753
||||||||||||||||||| ||||| |||||||| || |||||||| |||| ||||||||
Sbjct 792 TGGGAACATAACTAAAGTATTTAGAGAAACCAAG-AGATTCATGGTCTTCAAGGAAGAAG 850
Query 754 GAGAGCATAAATTCCAAAGAAGTAAAATGATCACTAACTACACAGAAAATATTGGAGATC 813
||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||
Sbjct 851 AAGAGCATAAATTCCAAAGAAGGAAAATGATTGCAAACTACACAGAAAATATTGGAGATC 910
Query 814 TTTGCATTTTCATTGAGAACAATGAGACATTTTGTTTAGAGGCAAGCAAGTATTCAGGAC 873
||||||||||||||| || ||||||||||||||||| || |||||||||||| | ||||
Sbjct 911 TTTGCATTTTCATTGGGAGGAATGAGACATTTTGTTTGGAAGCAAGCAAGTATCCGGGAC 970
Query 874 TCAGGCCAAACTCTATATATTATGTTGGTCATGGCTTTGGTGTTTACGATATCAGTAAGA 933
|||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 971 TCAGGCGTAACTCTATATATTATACCGGTCATGGCTTTGGTGTTTACGATATCCGTAAGA 1030
Query 934 AAAGCGTCCGTGAATATGAC 953
||||| ||||||||||||||
Sbjct 1031 AAAGCTTCCGTGAATATGAC 1050
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52861173885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5