BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg949999
Length=1309
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53860.4 | Symbols: emb2737 | embryo defective 2737 | chr5:2... 1332 0.0
> AT5G53860.4 | Symbols: emb2737 | embryo defective 2737 | chr5:21865268-21868842
FORWARD LENGTH=1731
Length=1731
Score = 1332 bits (721), Expect = 0.0
Identities = 768/791 (97%), Gaps = 2/791 (0%)
Strand=Plus/Plus
Query 3 TCTTCTTCGTCTTCTCCAATGTCGAGAGGACCAGGTCGTTTAATACAGAACGTGACACAG 62
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 68 TCTTCTTCATCTTCTCCAATGTCGAGAGGACCAGGTCGTTTAATACAGAACGTGACACAG 127
Query 63 TTCGCTGATGCTCAATTCAAACAATTCTCTACTCGTTATGGACAACAAGTCATAGACATT 122
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 128 TTCGCTGATGCTCAATTCAAACAATTCTCTACTCGTTATGGACAACAAGTTATAGACATT 187
Query 123 CTCGATTTCCCAATCAAGCTTGTCTTGTCTCCTTTCACTCTCGCTTTTGATATCGCTGGC 182
|||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 188 CTCGATTTTCCAATCAAGCTCGTCTTGTCTCCTTTCACTCTCGCCTTTGATATCGCTGGC 247
Query 183 TCTGCACCTCGTGGTTTTGGCATCCCTGAATTCATCTCCAAAATTTCGTATCTCTCTGTT 242
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 248 TCTGCACCTCGTGGTTTTGGCATCCCTGAGTTCATCTCCAAAATTTCGTATCTCTCTGTT 307
Query 243 TTCGCGGTTGCTACGCTTGGAACTTATGACATTGCATTGGATTTGGGGAAGAAAGTCATA 302
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 308 TTTGCGGTTGCTACGCTTGGAACTTATGACATTGCATTGGATTTGGGAAAGAAAGTCATA 367
Query 303 TGCCAAAGGGATTGCAAAACTTGTAATGGGTGGCAGGCATTACGGTGCACTATGTGCAAA 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 TGCCAAAGGGATTGCAAAACTTGTAATGGGTGGCAGGCATTACGGTGCACTATGTGCAAA 427
Query 363 GGATCAGGGAGTGTTCGTTACCAAATCAAAGATTACAACTTGAGAAGTGGAGAGAAACCA 422
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 GGAACAGGGAGTGTTCATTACCAAATCAAAGATTACAACTTGAGAAGTGGAGAGAAACCA 487
Query 423 ACAGCAGATTGTGTCGCAGATGCCATAGTTGACAATCGAGCTGAGTTGGTTCATCTTCCC 482
||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct 488 ACAGCAGATTGTGTCGCAGATGCTATAGTTGAGAATCGAGCTGAGTTAGTTCATCTTCCC 547
Query 483 TCCTCCATCAACCATAGTGCTCCATTGCCATCAAAAGACTGCCCAACTTGTGATGGAACG 542
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 TCCTCCTTCAACCATAGTGCTCCATTGCCATCAAAAGACTGCCCAACTTGTGATGGAACG 607
Query 543 GGCGTGATGAGCTGTACTGAGTGCAAGAACAAGCTGCAAGTCAGGATCTCGGCTGATGAT 602
|| | ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 608 GGTGCGATGAGCTGTACTGAGTGCAAGAACAAGCTGCAAGTCAGAATCTCAGCTGATGAT 667
Query 603 ATCATGGAACCTCCATGGAAAGCCTATAATGTGCTGAGGAAGATGGATTATCCTTACGAG 662
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 668 ATCATGGAACCTCCATGGAAAGCCTATAATGTGCTGAAGAAGATGGATTATCCGTACGAG 727
Query 663 CACATTGTTCACAGCATGAAAGATCCCAGCATTGCAAATTTCTGGTTGATCACTTTGCCT 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 728 CACATTGTTCACAGCATGAAAGATCCCAGCATTGCAAATTTCTGGTTGATCACTTTGCCT 787
Query 723 CAGATTGTGGGTGGGTTTGATTATGATGAAGATGTCAAGAAGAAAATATGGTGGCAATAC 782
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 CAGATTGTGGGTGGGTTTGATTATGATGAAGATGTCAAGAAGAAAATATGGTGGCAATAT 847
Query 783 GAG--GAATCT 791
||| ||||||
Sbjct 848 GAGTTGAATCT 858
Score = 872 bits (472), Expect = 0.0
Identities = 511/530 (96%), Gaps = 1/530 (0%)
Strand=Plus/Plus
Query 779 ATAC-GAGGAATCTATGCGATATGATCAACTTCGGGACTTGGTGGCTAAACGCAATCCTG 837
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 ATACTGATGAATCTATGCGATATGATCAACTTCGGGACTTGGTGGCTAAACGCAATCCTG 1013
Query 838 GCTGGGAATATTTGCAGGATGCCTTGGTCTCCATTGATCCTGTCCGTGCTCGGGAAGACC 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 GCTGGGAATATTTGCAGGATGCCTTGGTCTCCATTGATCCTGTCCGTGCTCGGGAAGACC 1073
Query 898 CTGTCATAGTGAAAAATGTTCTTTATTACAAGGCGAAGAAATCTCTGGAGGCTGAAGTCA 957
| ||||||||||| ||||| | |||||||||||| |||||||||||||||||||||||||
Sbjct 1074 CCGTCATAGTGAAGAATGTCCCTTATTACAAGGCTAAGAAATCTCTGGAGGCTGAAGTCA 1133
Query 958 CGAAACTCAGTCCACCTCCCCGCCCTCAGAATTGGGGTGAACTGAATCTCCCATTGAATA 1017
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1134 CGAAACTCAATCCACCTCCCCGTCCTCAGAATTGGGGTGAACTGAATCTCCCATTGAATA 1193
Query 1018 CTTCCTCTTGGAGTGAAGAGGACCTCAAAAACCCGGCAAAACTGTATGAGAAGACAGTTC 1077
||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1194 TTTCCTCTTGGAGTGAAGAGGATCTCAAAAACCCGGCAAAACTGTACGAGAAGACAGTTC 1253
Query 1078 TTCTCAATGCTCAAAGAGAAATCGCAGACAAAATCTTGGATGCACAATGGGAAGCTAAAT 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 TTCTCAATGCTCAAAGAGAAATCGCAGACAAAATCTTGGATGCACAATGGGAAGCTAAAT 1313
Query 1138 GGCGCCAAGAGAAGGTGGAGGAAATGTTGGAGGAGAAAGTGAGACCTTTCATCCAAGACT 1197
|||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 1314 GGCGTCAAGAGAAGGTGGAGGAAATGTTGGAGCAGAAAGTGAGACCTTACATCCAAGACT 1373
Query 1198 CAAGCATGGCTGTTCTTCCGCAACCCATCTTGTTAAAGTCACCGAAGAAAGCTCAAAAGG 1257
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 1374 CAAGCATGGCTGTTCTTCCACAACCCATCTTGTTAAAGTCACAGAAGAAAGCTCAAAAGG 1433
Query 1258 GAAGCCGGCAAAGGAAGTGGTGGTTCTTTTAACCAGCCAAGTGTGTCGAA 1307
|||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1434 GAAGCCGGCAAAGGAAGTGGTGGTTCTTCTAACCTGCCAAGTGTGTCGAA 1483
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64407299235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5