BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950003

Length=253
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G53880.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   355    1e-97


> AT5G53880.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: mitochondrion, plasma membrane; EXPRESSED IN: 
23 plant structures; EXPRESSED DURING: 13 growth stages; 
Has 30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr5:21872794-21873303 REVERSE LENGTH=510
Length=510

 Score =  355 bits (192),  Expect = 1e-97
 Identities = 223/237 (94%), Gaps = 5/237 (2%)
 Strand=Plus/Plus

Query  17   AGAGATAAAAATGAAGTTCTTGTTCCAGTGTCCATGTTGCTCTTGCTTCTGCTTCATGAA  76
            |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  100  AGAGA-GAAAATGAAGTTCTTGTTCCAGTGTCCATGTTGCTCTTGCTTCTGCTTCATGAA  158

Query  77   ACCAAAGCCAGGCAAACCAAAAGCTGTTGGAGATGTAAAACCaaaggaagagaagaagaa  136
            ||||||||| ||||||||||||||||||||||||  |||||||||||| |||||||||||
Sbjct  159  ACCAAAGCCGGGCAAACCAAAAGCTGTTGGAGATACAAAACCAAAGGAGGAGAAGAAGAA  218

Query  137  agaggcgaagaaagaagagatcaagaaagaggagaagaaagaagagatcaagaaagaaga  196
            ||||| |||||||||||||||||||||||||||||||||||||||||  | |||||||||
Sbjct  219  AGAGGTGAAGAAAGAAGAGATCAAGAAAGAGGAGAAGAAAGAAGAGA--A-GAAAGAAGA  275

Query  197  gaagaaggaagccaaagcagagaagGCTGAGTGAAAAACTCTGCTTTAAGAAAATGT  253
            |||||||||| |||||||||||||||||||||||||| |||| |||| |||||||||
Sbjct  276  GAAGAAGGAAACCAAAGCAGAGAAGGCTGAGTGAAAA-CTCTACTTTGAGAAAATGT  331



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11511314521


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5