BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950009
Length=732
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53910.1 | Symbols: | RING/U-box superfamily protein | chr5... 933 0.0
> AT5G53910.1 | Symbols: | RING/U-box superfamily protein | chr5:21890643-21891335
FORWARD LENGTH=693
Length=693
Score = 933 bits (505), Expect = 0.0
Identities = 635/697 (91%), Gaps = 11/697 (2%)
Strand=Plus/Plus
Query 23 ATGGAAGCTACTCCAGAATTCAACTACCAAATTGATGTCAATCCTGAACGCAAAAAGATT 82
|||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAGCTACTCCTGTATTCAACTACCATATTGATGTCAATCCTGAACGCAAAAAGATT 60
Query 83 GGCACAATCCAAGTCTAT-TCAAGTTTCGTCAGACCAGCCAACATG-CAGCCGATACTAA 140
|||||||||||||||||| | |||||||||| || ||||||||||| | |||||||||||
Sbjct 61 GGCACAATCCAAGTCTATGT-AAGTTTCGTCGGATCAGCCAACATGTC-GCCGATACTAA 118
Query 141 CCCGGTCGAACTTCTCATGTTCATTACCTGCCAATGAATTCACTGACGACGAAGATTCTC 200
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 119 CCCGGTCTAACTTCTCATGTTCATTACCTGCCAATGAATTAACTGACGACGAAGATTCTC 178
Query 201 CCCACAAACAAAGACTCTATTACTTCTTAAAAGATTCAGGAGTTGATGCAGAAGATGCTT 260
|||||||||||||||||||||||||||||| |||||||| ||||||| || |||||||||
Sbjct 179 CCCACAAACAAAGACTCTATTACTTCTTAACAGATTCAGCAGTTGATTCACAAGATGCTT 238
Query 261 ACACGTTAATAATAAAACTCACTCAACTTGCATGTAAAGTAACTTCTAATTCGTTTGAAT 320
||||||||||| |||||||||||||||||||| || | |||||||||||||||||||||
Sbjct 239 ACACGTTAATACTAAAACTCACTCAACTTGCACGTGATTTAACTTCTAATTCGTTTGAAT 298
Query 321 ATTGTTCACGTTATGCTTTGTTATTGTGGTTGACTCTTGATGTGGCTCCTTCGAACGAAT 380
| ||| ||||||||||||||| | ||||||||||||||||||||||||||| ||| ||||
Sbjct 299 ACTGTCCACGTTATGCTTTGTCAGTGTGGTTGACTCTTGATGTGGCTCCTTTGAATGAAT 358
Query 381 ATGAGAGGAATAGCGCGTTTAGACCCGCGAGCAAGTTGAGAGT-TGAGGCCTTGAGCAGG 439
||||||||||||||| || ||||||||||||||| || || || || ||||||||||||
Sbjct 359 ATGAGAGGAATAGCGAGTATAGACCCGCGAGCAATTTAAGGGTCGGA-GCCTTGAGCAGG 417
Query 440 AGAATATACAAGAGGAAACGAAAGACCAGCTCTATTGCTAACCAGTGCAAAAGATACAAG 499
||||||||||||||||||| |||||||||||||||||||||| || ||| |||||||| |
Sbjct 418 AGAATATACAAGAGGAAACAAAAGACCAGCTCTATTGCTAACAAGAGCACAAGATACATG 477
Query 500 AGAAAACAAGAGAGC-AGCTCTAGTGGT--G-ACAAGTGCACAATTTGTTTTCAGAAGTT 555
||||||| ||||| | | ||||||||| | |||| ||| |||||||||||||| ||||
Sbjct 478 AGAAAACGAGAGACCTA-TTCTAGTGGTGAGTACAAATGCGCAATTTGTTTTCAGGAGTT 536
Query 556 GAAAACCGGACAAGAAGTTGCTACTTTACTTTGTGGTCATGAATTTGACAATAAGTGTAT 615
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TAAAACCGGACGAGAAGTTGCTACTTTACTTTGTGGTCATGAATTTGACAATAAGTGTAT 596
Query 616 TATGGAATGGTTTAAGGTTCGCCACAATTGTCCATTGTGTCGCTTCGAGTTACCACCTGA 675
|||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||
Sbjct 597 TATGGAATGGTTTAAGGTTCGCTACAATTGTCCATTGTGTCGCTTCGAATTACCACGTGA 656
Query 676 ACATGATCAGGTTCCTCAACTAACTACAGTTTTCTAA 712
| ||||||| |||||||| |||||||| ||| |||
Sbjct 657 AGATGATCATATTCCTCAAAGAACTACAGATTTATAA 693
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35515541929
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5